Cargando…
Banff 2019 Meeting Report: Molecular diagnostics in solid organ transplantation–Consensus for the Banff Human Organ Transplant (B‐HOT) gene panel and open source multicenter validation
This meeting report from the XV Banff conference describes the creation of a multiorgan transplant gene panel by the Banff Molecular Diagnostics Working Group (MDWG). This Banff Human Organ Transplant (B‐HOT) panel is the culmination of previous work by the MDWG to identify a broadly useful gene pan...
Autores principales: | , , , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7496585/ https://www.ncbi.nlm.nih.gov/pubmed/32428337 http://dx.doi.org/10.1111/ajt.16059 |
_version_ | 1783583130827882496 |
---|---|
author | Mengel, Michael Loupy, Alexandre Haas, Mark Roufosse, Candice Naesens, Maarten Akalin, Enver Clahsen‐van Groningen, Marian C. Dagobert, Jessy Demetris, Anthony J. Duong van Huyen, Jean‐Paul Gueguen, Juliette Issa, Fadi Robin, Blaise Rosales, Ivy Von der Thüsen, Jan H. Sanchez‐Fueyo, Alberto Smith, Rex N. Wood, Kathryn Adam, Benjamin Colvin, Robert B. |
author_facet | Mengel, Michael Loupy, Alexandre Haas, Mark Roufosse, Candice Naesens, Maarten Akalin, Enver Clahsen‐van Groningen, Marian C. Dagobert, Jessy Demetris, Anthony J. Duong van Huyen, Jean‐Paul Gueguen, Juliette Issa, Fadi Robin, Blaise Rosales, Ivy Von der Thüsen, Jan H. Sanchez‐Fueyo, Alberto Smith, Rex N. Wood, Kathryn Adam, Benjamin Colvin, Robert B. |
author_sort | Mengel, Michael |
collection | PubMed |
description | This meeting report from the XV Banff conference describes the creation of a multiorgan transplant gene panel by the Banff Molecular Diagnostics Working Group (MDWG). This Banff Human Organ Transplant (B‐HOT) panel is the culmination of previous work by the MDWG to identify a broadly useful gene panel based on whole transcriptome technology. A data‐driven process distilled a gene list from peer‐reviewed comprehensive microarray studies that discovered and validated their use in kidney, liver, heart, and lung transplant biopsies. These were supplemented by genes that define relevant cellular pathways and cell types plus 12 reference genes used for normalization. The 770 gene B‐HOT panel includes the most pertinent genes related to rejection, tolerance, viral infections, and innate and adaptive immune responses. This commercially available panel uses the NanoString platform, which can quantitate transcripts from formalin‐fixed paraffin‐embedded samples. The B‐HOT panel will facilitate multicenter collaborative clinical research using archival samples and permit the development of an open source large database of standardized analyses, thereby expediting clinical validation studies. The MDWG believes that a pathogenesis and pathway based molecular approach will be valuable for investigators and promote therapeutic decision‐making and clinical trials. |
format | Online Article Text |
id | pubmed-7496585 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-74965852020-09-25 Banff 2019 Meeting Report: Molecular diagnostics in solid organ transplantation–Consensus for the Banff Human Organ Transplant (B‐HOT) gene panel and open source multicenter validation Mengel, Michael Loupy, Alexandre Haas, Mark Roufosse, Candice Naesens, Maarten Akalin, Enver Clahsen‐van Groningen, Marian C. Dagobert, Jessy Demetris, Anthony J. Duong van Huyen, Jean‐Paul Gueguen, Juliette Issa, Fadi Robin, Blaise Rosales, Ivy Von der Thüsen, Jan H. Sanchez‐Fueyo, Alberto Smith, Rex N. Wood, Kathryn Adam, Benjamin Colvin, Robert B. Am J Transplant Meeting Reports This meeting report from the XV Banff conference describes the creation of a multiorgan transplant gene panel by the Banff Molecular Diagnostics Working Group (MDWG). This Banff Human Organ Transplant (B‐HOT) panel is the culmination of previous work by the MDWG to identify a broadly useful gene panel based on whole transcriptome technology. A data‐driven process distilled a gene list from peer‐reviewed comprehensive microarray studies that discovered and validated their use in kidney, liver, heart, and lung transplant biopsies. These were supplemented by genes that define relevant cellular pathways and cell types plus 12 reference genes used for normalization. The 770 gene B‐HOT panel includes the most pertinent genes related to rejection, tolerance, viral infections, and innate and adaptive immune responses. This commercially available panel uses the NanoString platform, which can quantitate transcripts from formalin‐fixed paraffin‐embedded samples. The B‐HOT panel will facilitate multicenter collaborative clinical research using archival samples and permit the development of an open source large database of standardized analyses, thereby expediting clinical validation studies. The MDWG believes that a pathogenesis and pathway based molecular approach will be valuable for investigators and promote therapeutic decision‐making and clinical trials. John Wiley and Sons Inc. 2020-06-27 2020-09 /pmc/articles/PMC7496585/ /pubmed/32428337 http://dx.doi.org/10.1111/ajt.16059 Text en © 2020 The Authors. American Journal of Transplantation published by Wiley Periodicals LLC on behalf of The American Society of Transplantation and the American Society of Transplant Surgeons This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Meeting Reports Mengel, Michael Loupy, Alexandre Haas, Mark Roufosse, Candice Naesens, Maarten Akalin, Enver Clahsen‐van Groningen, Marian C. Dagobert, Jessy Demetris, Anthony J. Duong van Huyen, Jean‐Paul Gueguen, Juliette Issa, Fadi Robin, Blaise Rosales, Ivy Von der Thüsen, Jan H. Sanchez‐Fueyo, Alberto Smith, Rex N. Wood, Kathryn Adam, Benjamin Colvin, Robert B. Banff 2019 Meeting Report: Molecular diagnostics in solid organ transplantation–Consensus for the Banff Human Organ Transplant (B‐HOT) gene panel and open source multicenter validation |
title | Banff 2019 Meeting Report: Molecular diagnostics in solid organ transplantation–Consensus for the Banff Human Organ Transplant (B‐HOT) gene panel and open source multicenter validation |
title_full | Banff 2019 Meeting Report: Molecular diagnostics in solid organ transplantation–Consensus for the Banff Human Organ Transplant (B‐HOT) gene panel and open source multicenter validation |
title_fullStr | Banff 2019 Meeting Report: Molecular diagnostics in solid organ transplantation–Consensus for the Banff Human Organ Transplant (B‐HOT) gene panel and open source multicenter validation |
title_full_unstemmed | Banff 2019 Meeting Report: Molecular diagnostics in solid organ transplantation–Consensus for the Banff Human Organ Transplant (B‐HOT) gene panel and open source multicenter validation |
title_short | Banff 2019 Meeting Report: Molecular diagnostics in solid organ transplantation–Consensus for the Banff Human Organ Transplant (B‐HOT) gene panel and open source multicenter validation |
title_sort | banff 2019 meeting report: molecular diagnostics in solid organ transplantation–consensus for the banff human organ transplant (b‐hot) gene panel and open source multicenter validation |
topic | Meeting Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7496585/ https://www.ncbi.nlm.nih.gov/pubmed/32428337 http://dx.doi.org/10.1111/ajt.16059 |
work_keys_str_mv | AT mengelmichael banff2019meetingreportmoleculardiagnosticsinsolidorgantransplantationconsensusforthebanffhumanorgantransplantbhotgenepanelandopensourcemulticentervalidation AT loupyalexandre banff2019meetingreportmoleculardiagnosticsinsolidorgantransplantationconsensusforthebanffhumanorgantransplantbhotgenepanelandopensourcemulticentervalidation AT haasmark banff2019meetingreportmoleculardiagnosticsinsolidorgantransplantationconsensusforthebanffhumanorgantransplantbhotgenepanelandopensourcemulticentervalidation AT roufossecandice banff2019meetingreportmoleculardiagnosticsinsolidorgantransplantationconsensusforthebanffhumanorgantransplantbhotgenepanelandopensourcemulticentervalidation AT naesensmaarten banff2019meetingreportmoleculardiagnosticsinsolidorgantransplantationconsensusforthebanffhumanorgantransplantbhotgenepanelandopensourcemulticentervalidation AT akalinenver banff2019meetingreportmoleculardiagnosticsinsolidorgantransplantationconsensusforthebanffhumanorgantransplantbhotgenepanelandopensourcemulticentervalidation AT clahsenvangroningenmarianc banff2019meetingreportmoleculardiagnosticsinsolidorgantransplantationconsensusforthebanffhumanorgantransplantbhotgenepanelandopensourcemulticentervalidation AT dagobertjessy banff2019meetingreportmoleculardiagnosticsinsolidorgantransplantationconsensusforthebanffhumanorgantransplantbhotgenepanelandopensourcemulticentervalidation AT demetrisanthonyj banff2019meetingreportmoleculardiagnosticsinsolidorgantransplantationconsensusforthebanffhumanorgantransplantbhotgenepanelandopensourcemulticentervalidation AT duongvanhuyenjeanpaul banff2019meetingreportmoleculardiagnosticsinsolidorgantransplantationconsensusforthebanffhumanorgantransplantbhotgenepanelandopensourcemulticentervalidation AT gueguenjuliette banff2019meetingreportmoleculardiagnosticsinsolidorgantransplantationconsensusforthebanffhumanorgantransplantbhotgenepanelandopensourcemulticentervalidation AT issafadi banff2019meetingreportmoleculardiagnosticsinsolidorgantransplantationconsensusforthebanffhumanorgantransplantbhotgenepanelandopensourcemulticentervalidation AT robinblaise banff2019meetingreportmoleculardiagnosticsinsolidorgantransplantationconsensusforthebanffhumanorgantransplantbhotgenepanelandopensourcemulticentervalidation AT rosalesivy banff2019meetingreportmoleculardiagnosticsinsolidorgantransplantationconsensusforthebanffhumanorgantransplantbhotgenepanelandopensourcemulticentervalidation AT vonderthusenjanh banff2019meetingreportmoleculardiagnosticsinsolidorgantransplantationconsensusforthebanffhumanorgantransplantbhotgenepanelandopensourcemulticentervalidation AT sanchezfueyoalberto banff2019meetingreportmoleculardiagnosticsinsolidorgantransplantationconsensusforthebanffhumanorgantransplantbhotgenepanelandopensourcemulticentervalidation AT smithrexn banff2019meetingreportmoleculardiagnosticsinsolidorgantransplantationconsensusforthebanffhumanorgantransplantbhotgenepanelandopensourcemulticentervalidation AT woodkathryn banff2019meetingreportmoleculardiagnosticsinsolidorgantransplantationconsensusforthebanffhumanorgantransplantbhotgenepanelandopensourcemulticentervalidation AT adambenjamin banff2019meetingreportmoleculardiagnosticsinsolidorgantransplantationconsensusforthebanffhumanorgantransplantbhotgenepanelandopensourcemulticentervalidation AT colvinrobertb banff2019meetingreportmoleculardiagnosticsinsolidorgantransplantationconsensusforthebanffhumanorgantransplantbhotgenepanelandopensourcemulticentervalidation |