Cargando…

Graphical calibration curves and the integrated calibration index (ICI) for survival models

In the context of survival analysis, calibration refers to the agreement between predicted probabilities and observed event rates or frequencies of the outcome within a given duration of time. We aimed to describe and evaluate methods for graphically assessing the calibration of survival models. We...

Descripción completa

Detalles Bibliográficos
Autores principales: Austin, Peter C., Harrell, Frank E., van Klaveren, David
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons, Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7497089/
https://www.ncbi.nlm.nih.gov/pubmed/32548928
http://dx.doi.org/10.1002/sim.8570
_version_ 1783583241725280256
author Austin, Peter C.
Harrell, Frank E.
van Klaveren, David
author_facet Austin, Peter C.
Harrell, Frank E.
van Klaveren, David
author_sort Austin, Peter C.
collection PubMed
description In the context of survival analysis, calibration refers to the agreement between predicted probabilities and observed event rates or frequencies of the outcome within a given duration of time. We aimed to describe and evaluate methods for graphically assessing the calibration of survival models. We focus on hazard regression models and restricted cubic splines in conjunction with a Cox proportional hazards model. We also describe modifications of the Integrated Calibration Index, of E50 and of E90. In this context, this is the average (respectively, median or 90th percentile) absolute difference between predicted survival probabilities and smoothed survival frequencies. We conducted a series of Monte Carlo simulations to evaluate the performance of these calibration measures when the underlying model has been correctly specified and under different types of model mis‐specification. We illustrate the utility of calibration curves and the three calibration metrics by using them to compare the calibration of a Cox proportional hazards regression model with that of a random survival forest for predicting mortality in patients hospitalized with heart failure. Under a correctly specified regression model, differences between the two methods for constructing calibration curves were minimal, although the performance of the method based on restricted cubic splines tended to be slightly better. In contrast, under a mis‐specified model, the smoothed calibration curved constructed using hazard regression tended to be closer to the true calibration curve. The use of calibration curves and of these numeric calibration metrics permits for a comprehensive comparison of the calibration of competing survival models.
format Online
Article
Text
id pubmed-7497089
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher John Wiley & Sons, Inc.
record_format MEDLINE/PubMed
spelling pubmed-74970892020-09-25 Graphical calibration curves and the integrated calibration index (ICI) for survival models Austin, Peter C. Harrell, Frank E. van Klaveren, David Stat Med Research Articles In the context of survival analysis, calibration refers to the agreement between predicted probabilities and observed event rates or frequencies of the outcome within a given duration of time. We aimed to describe and evaluate methods for graphically assessing the calibration of survival models. We focus on hazard regression models and restricted cubic splines in conjunction with a Cox proportional hazards model. We also describe modifications of the Integrated Calibration Index, of E50 and of E90. In this context, this is the average (respectively, median or 90th percentile) absolute difference between predicted survival probabilities and smoothed survival frequencies. We conducted a series of Monte Carlo simulations to evaluate the performance of these calibration measures when the underlying model has been correctly specified and under different types of model mis‐specification. We illustrate the utility of calibration curves and the three calibration metrics by using them to compare the calibration of a Cox proportional hazards regression model with that of a random survival forest for predicting mortality in patients hospitalized with heart failure. Under a correctly specified regression model, differences between the two methods for constructing calibration curves were minimal, although the performance of the method based on restricted cubic splines tended to be slightly better. In contrast, under a mis‐specified model, the smoothed calibration curved constructed using hazard regression tended to be closer to the true calibration curve. The use of calibration curves and of these numeric calibration metrics permits for a comprehensive comparison of the calibration of competing survival models. John Wiley & Sons, Inc. 2020-06-16 2020-09-20 /pmc/articles/PMC7497089/ /pubmed/32548928 http://dx.doi.org/10.1002/sim.8570 Text en © 2020 The Authors. Statistics in Medicine published by John Wiley & Sons, Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Research Articles
Austin, Peter C.
Harrell, Frank E.
van Klaveren, David
Graphical calibration curves and the integrated calibration index (ICI) for survival models
title Graphical calibration curves and the integrated calibration index (ICI) for survival models
title_full Graphical calibration curves and the integrated calibration index (ICI) for survival models
title_fullStr Graphical calibration curves and the integrated calibration index (ICI) for survival models
title_full_unstemmed Graphical calibration curves and the integrated calibration index (ICI) for survival models
title_short Graphical calibration curves and the integrated calibration index (ICI) for survival models
title_sort graphical calibration curves and the integrated calibration index (ici) for survival models
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7497089/
https://www.ncbi.nlm.nih.gov/pubmed/32548928
http://dx.doi.org/10.1002/sim.8570
work_keys_str_mv AT austinpeterc graphicalcalibrationcurvesandtheintegratedcalibrationindexiciforsurvivalmodels
AT harrellfranke graphicalcalibrationcurvesandtheintegratedcalibrationindexiciforsurvivalmodels
AT vanklaverendavid graphicalcalibrationcurvesandtheintegratedcalibrationindexiciforsurvivalmodels