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Identification of an Immune Signature Predicting Prognosis Risk and Lymphocyte Infiltration in Colon Cancer
Increasing studies have highlighted the effects of the tumor immune micro-environment (TIM) on colon cancer (CC) tumorigenesis, prognosis, and metastasis. However, there is no reliable molecular marker that can effectively estimate the immune infiltration and predict the CC relapse risk. Here, we le...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7497441/ https://www.ncbi.nlm.nih.gov/pubmed/33013820 http://dx.doi.org/10.3389/fimmu.2020.01678 |
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author | Li, Xinyu Wen, Dacheng Li, Xiaokang Yao, Chunli Chong, Wei Chen, Hao |
author_facet | Li, Xinyu Wen, Dacheng Li, Xiaokang Yao, Chunli Chong, Wei Chen, Hao |
author_sort | Li, Xinyu |
collection | PubMed |
description | Increasing studies have highlighted the effects of the tumor immune micro-environment (TIM) on colon cancer (CC) tumorigenesis, prognosis, and metastasis. However, there is no reliable molecular marker that can effectively estimate the immune infiltration and predict the CC relapse risk. Here, we leveraged the gene expression profile and clinical characteristics from 1430 samples, including four gene expression omnibus database (GEO) databases and the cancer genome atlas (TCGA) database, to construct an immune risk signature that could be used as a predictor of survival outcome and immune activity. A risk model consisting of 10 immune-related genes were screened out in the Lasso-Cox model and were then aggregated to generate the immune risk signature based on the regression coefficients. The signature demonstrated robust prognostic ability in discovery and validation datasets, and this association remained significant in the multivariate analysis after controlling for age, gender, clinical stage, or microsatellite instability status. Leukocyte subpopulation analysis indicated that the low-risk signature was enriched with cytotoxic cells (activated CD4/CD8(+) T cell and NK cell) and depleted of myeloid-derived suppressor cells (MDSC) and regulatory T cells. Further analysis indicated patients with a low-risk signature harbored higher tumor mutation loads and lower mutational frequencies in significantly mutated genes of APC and FBXW7. Together, our constructed signature could predict prognosis and represent the TIM of CC, which promotes individualized treatment and provides a promising novel molecular marker for immunotherapy. |
format | Online Article Text |
id | pubmed-7497441 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-74974412020-10-02 Identification of an Immune Signature Predicting Prognosis Risk and Lymphocyte Infiltration in Colon Cancer Li, Xinyu Wen, Dacheng Li, Xiaokang Yao, Chunli Chong, Wei Chen, Hao Front Immunol Immunology Increasing studies have highlighted the effects of the tumor immune micro-environment (TIM) on colon cancer (CC) tumorigenesis, prognosis, and metastasis. However, there is no reliable molecular marker that can effectively estimate the immune infiltration and predict the CC relapse risk. Here, we leveraged the gene expression profile and clinical characteristics from 1430 samples, including four gene expression omnibus database (GEO) databases and the cancer genome atlas (TCGA) database, to construct an immune risk signature that could be used as a predictor of survival outcome and immune activity. A risk model consisting of 10 immune-related genes were screened out in the Lasso-Cox model and were then aggregated to generate the immune risk signature based on the regression coefficients. The signature demonstrated robust prognostic ability in discovery and validation datasets, and this association remained significant in the multivariate analysis after controlling for age, gender, clinical stage, or microsatellite instability status. Leukocyte subpopulation analysis indicated that the low-risk signature was enriched with cytotoxic cells (activated CD4/CD8(+) T cell and NK cell) and depleted of myeloid-derived suppressor cells (MDSC) and regulatory T cells. Further analysis indicated patients with a low-risk signature harbored higher tumor mutation loads and lower mutational frequencies in significantly mutated genes of APC and FBXW7. Together, our constructed signature could predict prognosis and represent the TIM of CC, which promotes individualized treatment and provides a promising novel molecular marker for immunotherapy. Frontiers Media S.A. 2020-09-03 /pmc/articles/PMC7497441/ /pubmed/33013820 http://dx.doi.org/10.3389/fimmu.2020.01678 Text en Copyright © 2020 Li, Wen, Li, Yao, Chong and Chen. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Immunology Li, Xinyu Wen, Dacheng Li, Xiaokang Yao, Chunli Chong, Wei Chen, Hao Identification of an Immune Signature Predicting Prognosis Risk and Lymphocyte Infiltration in Colon Cancer |
title | Identification of an Immune Signature Predicting Prognosis Risk and Lymphocyte Infiltration in Colon Cancer |
title_full | Identification of an Immune Signature Predicting Prognosis Risk and Lymphocyte Infiltration in Colon Cancer |
title_fullStr | Identification of an Immune Signature Predicting Prognosis Risk and Lymphocyte Infiltration in Colon Cancer |
title_full_unstemmed | Identification of an Immune Signature Predicting Prognosis Risk and Lymphocyte Infiltration in Colon Cancer |
title_short | Identification of an Immune Signature Predicting Prognosis Risk and Lymphocyte Infiltration in Colon Cancer |
title_sort | identification of an immune signature predicting prognosis risk and lymphocyte infiltration in colon cancer |
topic | Immunology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7497441/ https://www.ncbi.nlm.nih.gov/pubmed/33013820 http://dx.doi.org/10.3389/fimmu.2020.01678 |
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