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Population genetic diversity in an Iraqi population and gene flow across the Arabian Peninsula
Y-STRs have emerged as important forensic and population genetic markers for human identification and population differentiation studies. Therefore, population databases for these markers have been developed for almost all major populations around the world. The Iraqi population encompasses several...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7499422/ https://www.ncbi.nlm.nih.gov/pubmed/32943725 http://dx.doi.org/10.1038/s41598-020-72283-1 |
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author | Lazim, Hayder Almohammed, Eida Khalaf Hadi, Sibte Smith, Judith |
author_facet | Lazim, Hayder Almohammed, Eida Khalaf Hadi, Sibte Smith, Judith |
author_sort | Lazim, Hayder |
collection | PubMed |
description | Y-STRs have emerged as important forensic and population genetic markers for human identification and population differentiation studies. Therefore, population databases for these markers have been developed for almost all major populations around the world. The Iraqi population encompasses several ethnic groups that need to be genetically characterised and evaluated for possible substructures. Previous studies on the Iraqi population based on Y-STR markers were limited by a restricted number of markers. A larger database for Iraqi Arab population needed to be developed to help study and compare the population with other Middle Eastern populations. Twenty-three Y-STR loci included in the PowerPlex Y23 (Promega, Madison, WI, USA) were typed in 254 males from the Iraqi Arab population. Global and regional Y-STR analysis demonstrated regional genetic continuity among the populations of Iraq, the Arabian Peninsula and the Middle East. The Iraqi Arab haplotypes were used to allocate samples to their most likely haplogroups using Athey’s Haplogroup Predictor tool. Prediction indicated predominance (36.6%) of haplogroup J1 in Iraqi Arabs. The migration rate between other populations and the Iraqis was inferred using coalescence theory in the Migrate-n program. Y-STR data were used to test different out-of-Africa migration models as well as more recent migrations within the Arabian Peninsula. The migration models demonstrated that gene flow to Iraq began from East Africa, with the Levantine corridor the most probable passageway out of Africa. The data presented here will enrich our understanding of genetic diversity in the region and introduce a PowerPlex Y23 database to the forensic community. |
format | Online Article Text |
id | pubmed-7499422 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-74994222020-09-22 Population genetic diversity in an Iraqi population and gene flow across the Arabian Peninsula Lazim, Hayder Almohammed, Eida Khalaf Hadi, Sibte Smith, Judith Sci Rep Article Y-STRs have emerged as important forensic and population genetic markers for human identification and population differentiation studies. Therefore, population databases for these markers have been developed for almost all major populations around the world. The Iraqi population encompasses several ethnic groups that need to be genetically characterised and evaluated for possible substructures. Previous studies on the Iraqi population based on Y-STR markers were limited by a restricted number of markers. A larger database for Iraqi Arab population needed to be developed to help study and compare the population with other Middle Eastern populations. Twenty-three Y-STR loci included in the PowerPlex Y23 (Promega, Madison, WI, USA) were typed in 254 males from the Iraqi Arab population. Global and regional Y-STR analysis demonstrated regional genetic continuity among the populations of Iraq, the Arabian Peninsula and the Middle East. The Iraqi Arab haplotypes were used to allocate samples to their most likely haplogroups using Athey’s Haplogroup Predictor tool. Prediction indicated predominance (36.6%) of haplogroup J1 in Iraqi Arabs. The migration rate between other populations and the Iraqis was inferred using coalescence theory in the Migrate-n program. Y-STR data were used to test different out-of-Africa migration models as well as more recent migrations within the Arabian Peninsula. The migration models demonstrated that gene flow to Iraq began from East Africa, with the Levantine corridor the most probable passageway out of Africa. The data presented here will enrich our understanding of genetic diversity in the region and introduce a PowerPlex Y23 database to the forensic community. Nature Publishing Group UK 2020-09-17 /pmc/articles/PMC7499422/ /pubmed/32943725 http://dx.doi.org/10.1038/s41598-020-72283-1 Text en © Crown 2020 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Lazim, Hayder Almohammed, Eida Khalaf Hadi, Sibte Smith, Judith Population genetic diversity in an Iraqi population and gene flow across the Arabian Peninsula |
title | Population genetic diversity in an Iraqi population and gene flow across the Arabian Peninsula |
title_full | Population genetic diversity in an Iraqi population and gene flow across the Arabian Peninsula |
title_fullStr | Population genetic diversity in an Iraqi population and gene flow across the Arabian Peninsula |
title_full_unstemmed | Population genetic diversity in an Iraqi population and gene flow across the Arabian Peninsula |
title_short | Population genetic diversity in an Iraqi population and gene flow across the Arabian Peninsula |
title_sort | population genetic diversity in an iraqi population and gene flow across the arabian peninsula |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7499422/ https://www.ncbi.nlm.nih.gov/pubmed/32943725 http://dx.doi.org/10.1038/s41598-020-72283-1 |
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