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Comprehensive transcriptome resource for response to phytohormone-induced signaling in Capsicum annuum L.

OBJECTIVES: Phytohormones are small signaling molecules with crucial roles in plant growth, development, and environmental adaptation to biotic and abiotic stress responses. Despite several previously published molecular studies focused on plant hormones, our understanding of the transcriptome induc...

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Autores principales: Lee, Junesung, Nam, Jae-Young, Jang, Hakgi, Kim, Nayoung, Kim, Yong-Min, Kang, Won-Hee, Yeom, Seon-In
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7499990/
https://www.ncbi.nlm.nih.gov/pubmed/32943083
http://dx.doi.org/10.1186/s13104-020-05281-1
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author Lee, Junesung
Nam, Jae-Young
Jang, Hakgi
Kim, Nayoung
Kim, Yong-Min
Kang, Won-Hee
Yeom, Seon-In
author_facet Lee, Junesung
Nam, Jae-Young
Jang, Hakgi
Kim, Nayoung
Kim, Yong-Min
Kang, Won-Hee
Yeom, Seon-In
author_sort Lee, Junesung
collection PubMed
description OBJECTIVES: Phytohormones are small signaling molecules with crucial roles in plant growth, development, and environmental adaptation to biotic and abiotic stress responses. Despite several previously published molecular studies focused on plant hormones, our understanding of the transcriptome induced by phytohormones remains unclear, especially in major crops. Here, we aimed to provide transcriptome dataset using RNA sequencing for phytohormone-induced signaling in plant. DATA DESCRIPTION: We used high-throughput RNA sequencing profiling to investigate the pepper plant response to treatment with four major phytohormones (salicylic acid, jasmonic acid, ethylene, and abscisic acid). This dataset yielded 78 samples containing three biological replicates per six different time points for each treatment and the control, constituting 187.8 Gb of transcriptome data (2.4 Gb of each sample). This comprehensive parallel transcriptome data provides valuable information for understanding the relationships and molecular networks that regulate the expression of phytohormone-related genes involved in plant developments and environmental stress adaptation.
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spelling pubmed-74999902020-09-21 Comprehensive transcriptome resource for response to phytohormone-induced signaling in Capsicum annuum L. Lee, Junesung Nam, Jae-Young Jang, Hakgi Kim, Nayoung Kim, Yong-Min Kang, Won-Hee Yeom, Seon-In BMC Res Notes Data Note OBJECTIVES: Phytohormones are small signaling molecules with crucial roles in plant growth, development, and environmental adaptation to biotic and abiotic stress responses. Despite several previously published molecular studies focused on plant hormones, our understanding of the transcriptome induced by phytohormones remains unclear, especially in major crops. Here, we aimed to provide transcriptome dataset using RNA sequencing for phytohormone-induced signaling in plant. DATA DESCRIPTION: We used high-throughput RNA sequencing profiling to investigate the pepper plant response to treatment with four major phytohormones (salicylic acid, jasmonic acid, ethylene, and abscisic acid). This dataset yielded 78 samples containing three biological replicates per six different time points for each treatment and the control, constituting 187.8 Gb of transcriptome data (2.4 Gb of each sample). This comprehensive parallel transcriptome data provides valuable information for understanding the relationships and molecular networks that regulate the expression of phytohormone-related genes involved in plant developments and environmental stress adaptation. BioMed Central 2020-09-18 /pmc/articles/PMC7499990/ /pubmed/32943083 http://dx.doi.org/10.1186/s13104-020-05281-1 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Data Note
Lee, Junesung
Nam, Jae-Young
Jang, Hakgi
Kim, Nayoung
Kim, Yong-Min
Kang, Won-Hee
Yeom, Seon-In
Comprehensive transcriptome resource for response to phytohormone-induced signaling in Capsicum annuum L.
title Comprehensive transcriptome resource for response to phytohormone-induced signaling in Capsicum annuum L.
title_full Comprehensive transcriptome resource for response to phytohormone-induced signaling in Capsicum annuum L.
title_fullStr Comprehensive transcriptome resource for response to phytohormone-induced signaling in Capsicum annuum L.
title_full_unstemmed Comprehensive transcriptome resource for response to phytohormone-induced signaling in Capsicum annuum L.
title_short Comprehensive transcriptome resource for response to phytohormone-induced signaling in Capsicum annuum L.
title_sort comprehensive transcriptome resource for response to phytohormone-induced signaling in capsicum annuum l.
topic Data Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7499990/
https://www.ncbi.nlm.nih.gov/pubmed/32943083
http://dx.doi.org/10.1186/s13104-020-05281-1
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