Cargando…

Phylogenetic Utility of rRNA ITS2 Sequence-Structure under Functional Constraint

The crucial function of the internal transcribed spacer 2 (ITS2) region in ribosome biogenesis depends on its secondary and tertiary structures. Despite rapidly evolving, ITS2 is under evolutionary constraints to maintain the specific secondary structures that provide functionality. A link between f...

Descripción completa

Detalles Bibliográficos
Autores principales:	Zhang, Wei, Tian, Wen, Gao, Zhipeng, Wang, Guoli, Zhao, Hong
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2020
Materias:	Review
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7504139/ https://www.ncbi.nlm.nih.gov/pubmed/32899108 http://dx.doi.org/10.3390/ijms21176395

Ejemplares similares

Sequence and Phylogenetic Analysis of SSU rRNA Gene of Five Microsporidia
por: Dong, ShiNan, et al.
Publicado: (2009)

Phylogenetic inference of Coxiella burnetii by 16S rRNA gene sequencing
por: McLaughlin, Heather P., et al.
Publicado: (2017)

Secondary Structure Analyses of the Nuclear rRNA Internal Transcribed Spacers and Assessment of Its Phylogenetic Utility across the Brassicaceae (Mustards)
por: Edger, Patrick P., et al.
Publicado: (2014)

Molecular Phylogenetics and Systematics of the Bivalve Family Ostreidae Based on rRNA Sequence-Structure Models and Multilocus Species Tree
por: Salvi, Daniele, et al.
Publicado: (2014)

The effects of sequencing platforms on phylogenetic resolution in 16 S rRNA gene profiling of human feces
por: Whon, Tae Woong, et al.
Publicado: (2018)

Coevolution in RNA Molecules Driven by Selective Constraints: Evidence from 5S rRNA
por: Cheng, Nan, et al.
Publicado: (2012)

Internal Transcribed Spacer 2 (nu ITS2 rRNA) Sequence-Structure Phylogenetics: Towards an Automated Reconstruction of the Green Algal Tree of Life
por: Buchheim, Mark A., et al.
Publicado: (2011)

Bioprospection of Basidiomycetes and molecular phylogenetic analysis using internal transcribed spacer (ITS) and 5.8S rRNA gene sequence
por: Mowna Sundari, Thangamalai, et al.
Publicado: (2018)

Confident phylogenetic identification of uncultured prokaryotes through long read amplicon sequencing of the 16S‐ITS‐23S rRNA operon
por: Martijn, Joran, et al.
Publicado: (2019)

Séance: reference-based phylogenetic analysis for 18S rRNA studies
por: Medlar, Alan, et al.
Publicado: (2014)

Correction: Molecular Phylogenetics and Systematics of the Bivalve Family Ostreidae Based on rRNA Sequence-Structure Models and Multilocus Species Tree
Publicado: (2014)

Phylogenetic Analyses of Trichodinids (Ciliophora, Oligohymenophora) Inferred from 18S rRNA Gene Sequence Data
por: Tang, Fa-Hui, et al.
Publicado: (2012)

Phylogenetic position of Loricifera inferred from nearly complete 18S and 28S rRNA gene sequences
por: Yamasaki, Hiroshi, et al.
Publicado: (2015)

Equine Histoplasmosis in Ethiopia: Phylogenetic Analysis by Sequencing of the Internal Transcribed Spacer Region of rRNA Genes
por: Ameni, Gobena, et al.
Publicado: (2022)

Accuracy of taxonomy prediction for 16S rRNA and fungal ITS sequences
por: Edgar, Robert C.
Publicado: (2018)

Implications of sequence variation on the evolution of rRNA
por: Parks, Matthew M., et al.
Publicado: (2019)

28S rRNA sequences for Linguatula spp.
por: Shamsi, Shokoofeh, et al.
Publicado: (2022)

Phylogenetic Relationship of Phosphate Solubilizing Bacteria according to 16S rRNA Genes
por: Javadi Nobandegani, Mohammad Bagher, et al.
Publicado: (2015)

Sensitivity and correlation of hypervariable regions in 16S rRNA genes in phylogenetic analysis
por: Yang, Bo, et al.
Publicado: (2016)

Phylogenetic implications of nuclear rRNA IGS variation in Stipa L. (Poaceae)
por: Krawczyk, Katarzyna, et al.
Publicado: (2017)

Phylogenetic analysis of Arthrospira strains from Ordos based on 16S rRNA
por: Zhang, Jingnan, et al.
Publicado: (2022)

Reconstruction of ancestral RNA sequences under multiple structural constraints
por: Tremblay-Savard, Olivier, et al.
Publicado: (2016)

De novo Semi-alignment of 16S rRNA Gene Sequences for Deep Phylogenetic Characterization of Next Generation Sequencing Data
por: Avershina, Ekaterina, et al.
Publicado: (2013)

Determining the Clinical Utility of 16S rRNA Sequencing in the Management of Culture-Negative Pediatric Infections
por: Lim, Peter Paul C., et al.
Publicado: (2022)

986. Clinical Utility of 16S rRNA Sequencing and Impact on Outcomes in Adults with Suspected Infection
por: Weinert-Stein, Kaitlyn, et al.
Publicado: (2023)

Chicken rRNA Gene Cluster Structure
por: Dyomin, Alexander G., et al.
Publicado: (2016)

Next-Generation Genome Sequencing of Sedum plumbizincicola Sheds Light on the Structural Evolution of Plastid rRNA Operon and Phylogenetic Implications within Saxifragales
por: Ding, Hengwu, et al.
Publicado: (2019)

Correction to: Implications of sequence variation on the evolution of rRNA
por: Parks, Matthew M., et al.
Publicado: (2019)

Phylogenetic Affiliation of SSU rRNA Genes Generated by Massively Parallel Sequencing: New Insights into the Freshwater Protist Diversity
por: Taib, Najwa, et al.
Publicado: (2013)

Molecular phylogenetics of Trypanosomatidae: contrasting results from 18S rRNA and protein phylogenies
por: Hughes, Austin L, et al.
Publicado: (2003)

Phylogenetic analysis based evolutionary study of 16S rRNA in known Pseudomonas sp
por: Adhikari, Arindam, et al.
Publicado: (2015)

Phylogenetic relatedness determined between antibiotic resistance and 16S rRNA genes in actinobacteria
por: Sagova-Mareckova, Marketa, et al.
Publicado: (2015)

Reproductive Microbiomes in Domestic Livestock: Insights Utilizing 16S rRNA Gene Amplicon Community Sequencing
por: Poole, Rebecca K., et al.
Publicado: (2023)

Characterizing the composition of intestinal microflora by 16S rRNA gene sequencing
por: Wang, Wen-Jia, et al.
Publicado: (2020)

An Intergenic Non-Coding rRNA Correlated with Expression of the rRNA and Frequency of an rRNA Single Nucleotide Polymorphism in Lung Cancer Cells
por: Shiao, Yih-Horng, et al.
Publicado: (2009)

Phylogenetic relationships of fluorescent pseudomonads deduced from the sequence analysis of 16S rRNA, Pseudomonas-specific and rpoD genes
por: Rajwar, Asmita, et al.
Publicado: (2016)

Metagenomic and near full-length 16S rRNA sequence data in support of the phylogenetic analysis of the rumen bacterial community in steers
por: Myer, Phillip R., et al.
Publicado: (2016)

An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline (STAP)
por: Wu, Dongying, et al.
Publicado: (2008)

Meta-16S rRNA Gene Phylogenetic Reconstruction Reveals the Astonishing Diversity of Cosmopolitan Myxobacteria
por: Liu, Yang, et al.
Publicado: (2019)

Phylogenetic Signal Dissection of Heterogeneous 28S and 16S rRNA Genes in Spinicaudata (Branchiopoda, Diplostraca)
por: Sun, Xiaoyan, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_6ha9j3db6ut0gun6svpvihq30t