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In Silico Analyses and Cytotoxicity Study of Asiaticoside and Asiatic Acid from Malaysian Plant as Potential mTOR Inhibitors

Natural products remain a popular alternative treatment for many ailments in various countries. This study aimed to screen for potential mammalian target of rapamycin (mTOR) inhibitors from Malaysian natural substance, using the Natural Product Discovery database, and to determine the IC(50) of the...

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Autores principales: Zulkipli, Ninie Nadia, Zakaria, Rahimah, Long, Idris, Abdullah, Siti Fadilah, Muhammad, Erma Fatiha, Wahab, Habibah A., Sasongko, Teguh Haryo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7504803/
https://www.ncbi.nlm.nih.gov/pubmed/32887218
http://dx.doi.org/10.3390/molecules25173991
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author Zulkipli, Ninie Nadia
Zakaria, Rahimah
Long, Idris
Abdullah, Siti Fadilah
Muhammad, Erma Fatiha
Wahab, Habibah A.
Sasongko, Teguh Haryo
author_facet Zulkipli, Ninie Nadia
Zakaria, Rahimah
Long, Idris
Abdullah, Siti Fadilah
Muhammad, Erma Fatiha
Wahab, Habibah A.
Sasongko, Teguh Haryo
author_sort Zulkipli, Ninie Nadia
collection PubMed
description Natural products remain a popular alternative treatment for many ailments in various countries. This study aimed to screen for potential mammalian target of rapamycin (mTOR) inhibitors from Malaysian natural substance, using the Natural Product Discovery database, and to determine the IC(50) of the selected mTOR inhibitors against UMB1949 cell line. The crystallographic structure of the molecular target (mTOR) was obtained from Protein Data Bank, with Protein Data Bank (PDB) ID: 4DRI. Everolimus, an mTOR inhibitor, was used as a standard compound for the comparative analysis. Computational docking approach was performed, using AutoDock Vina (screening) and AutoDock 4.2.6 (analysis). Based on our analysis, asiaticoside and its derivative, asiatic acid, both from Centella asiatica, revealed optimum-binding affinities with mTOR that were comparable to our standard compound. The effect of asiaticoside and asiatic acid on mTOR inhibition was validated with UMB1949 cell line, and their IC(50) values were 300 and 60 µM, respectively, compared to everolimus (29.5 µM). Interestingly, this is the first study of asiaticoside and asiatic acid against tuberous sclerosis complex (TSC) disease model by targeting mTOR. These results, coupled with our in silico findings, should prompt further studies, to clarify the mode of action, safety, and efficacy of these compounds as mTOR inhibitors.
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spelling pubmed-75048032020-09-26 In Silico Analyses and Cytotoxicity Study of Asiaticoside and Asiatic Acid from Malaysian Plant as Potential mTOR Inhibitors Zulkipli, Ninie Nadia Zakaria, Rahimah Long, Idris Abdullah, Siti Fadilah Muhammad, Erma Fatiha Wahab, Habibah A. Sasongko, Teguh Haryo Molecules Article Natural products remain a popular alternative treatment for many ailments in various countries. This study aimed to screen for potential mammalian target of rapamycin (mTOR) inhibitors from Malaysian natural substance, using the Natural Product Discovery database, and to determine the IC(50) of the selected mTOR inhibitors against UMB1949 cell line. The crystallographic structure of the molecular target (mTOR) was obtained from Protein Data Bank, with Protein Data Bank (PDB) ID: 4DRI. Everolimus, an mTOR inhibitor, was used as a standard compound for the comparative analysis. Computational docking approach was performed, using AutoDock Vina (screening) and AutoDock 4.2.6 (analysis). Based on our analysis, asiaticoside and its derivative, asiatic acid, both from Centella asiatica, revealed optimum-binding affinities with mTOR that were comparable to our standard compound. The effect of asiaticoside and asiatic acid on mTOR inhibition was validated with UMB1949 cell line, and their IC(50) values were 300 and 60 µM, respectively, compared to everolimus (29.5 µM). Interestingly, this is the first study of asiaticoside and asiatic acid against tuberous sclerosis complex (TSC) disease model by targeting mTOR. These results, coupled with our in silico findings, should prompt further studies, to clarify the mode of action, safety, and efficacy of these compounds as mTOR inhibitors. MDPI 2020-09-02 /pmc/articles/PMC7504803/ /pubmed/32887218 http://dx.doi.org/10.3390/molecules25173991 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zulkipli, Ninie Nadia
Zakaria, Rahimah
Long, Idris
Abdullah, Siti Fadilah
Muhammad, Erma Fatiha
Wahab, Habibah A.
Sasongko, Teguh Haryo
In Silico Analyses and Cytotoxicity Study of Asiaticoside and Asiatic Acid from Malaysian Plant as Potential mTOR Inhibitors
title In Silico Analyses and Cytotoxicity Study of Asiaticoside and Asiatic Acid from Malaysian Plant as Potential mTOR Inhibitors
title_full In Silico Analyses and Cytotoxicity Study of Asiaticoside and Asiatic Acid from Malaysian Plant as Potential mTOR Inhibitors
title_fullStr In Silico Analyses and Cytotoxicity Study of Asiaticoside and Asiatic Acid from Malaysian Plant as Potential mTOR Inhibitors
title_full_unstemmed In Silico Analyses and Cytotoxicity Study of Asiaticoside and Asiatic Acid from Malaysian Plant as Potential mTOR Inhibitors
title_short In Silico Analyses and Cytotoxicity Study of Asiaticoside and Asiatic Acid from Malaysian Plant as Potential mTOR Inhibitors
title_sort in silico analyses and cytotoxicity study of asiaticoside and asiatic acid from malaysian plant as potential mtor inhibitors
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7504803/
https://www.ncbi.nlm.nih.gov/pubmed/32887218
http://dx.doi.org/10.3390/molecules25173991
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