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Prediction of the Transition From Subexponential to the Exponential Transmission of SARS-CoV-2 in Chennai, India: Epidemic Nowcasting

BACKGROUND: Several countries adopted lockdown to slowdown the exponential transmission of the coronavirus disease (COVID-19) epidemic. Disease transmission models and the epidemic forecasts at the national level steer the policy to implement appropriate intervention strategies and budgeting. Howeve...

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Autores principales: Krishnamurthy, Kamalanand, Ambikapathy, Bakiya, Kumar, Ashwani, Britto, Lourduraj De
Formato: Online Artículo Texto
Lenguaje:English
Publicado: JMIR Publications 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7505694/
https://www.ncbi.nlm.nih.gov/pubmed/32609621
http://dx.doi.org/10.2196/21152
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author Krishnamurthy, Kamalanand
Ambikapathy, Bakiya
Kumar, Ashwani
Britto, Lourduraj De
author_facet Krishnamurthy, Kamalanand
Ambikapathy, Bakiya
Kumar, Ashwani
Britto, Lourduraj De
author_sort Krishnamurthy, Kamalanand
collection PubMed
description BACKGROUND: Several countries adopted lockdown to slowdown the exponential transmission of the coronavirus disease (COVID-19) epidemic. Disease transmission models and the epidemic forecasts at the national level steer the policy to implement appropriate intervention strategies and budgeting. However, it is critical to design a data-driven reliable model for nowcasting for smaller populations, in particular metro cities. OBJECTIVE: The aim of this study is to analyze the transition of the epidemic from subexponential to exponential transmission in the Chennai metro zone and to analyze the probability of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) secondary infections while availing the public transport systems in the city. METHODS: A single geographical zone “Chennai-Metro-Merge” was constructed by combining Chennai District with three bordering districts. Subexponential and exponential models were developed to analyze and predict the progression of the COVID-19 epidemic. Probabilistic models were applied to assess the probability of secondary infections while availing public transport after the release of the lockdown. RESULTS: The model predicted that transition from subexponential to exponential transmission occurs around the eighth week after the reporting of a cluster of cases. The probability of secondary infections with a single index case in an enclosure of the city bus, the suburban train general coach, and the ladies coach was found to be 0.192, 0.074, and 0.114, respectively. CONCLUSIONS: Nowcasting at the early stage of the epidemic predicts the probable time point of the exponential transmission and alerts the public health system. After the lockdown release, public transportation will be the major source of SARS-CoV-2 transmission in metro cities, and appropriate strategies based on nowcasting are needed.
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spelling pubmed-75056942020-10-05 Prediction of the Transition From Subexponential to the Exponential Transmission of SARS-CoV-2 in Chennai, India: Epidemic Nowcasting Krishnamurthy, Kamalanand Ambikapathy, Bakiya Kumar, Ashwani Britto, Lourduraj De JMIR Public Health Surveill Original Paper BACKGROUND: Several countries adopted lockdown to slowdown the exponential transmission of the coronavirus disease (COVID-19) epidemic. Disease transmission models and the epidemic forecasts at the national level steer the policy to implement appropriate intervention strategies and budgeting. However, it is critical to design a data-driven reliable model for nowcasting for smaller populations, in particular metro cities. OBJECTIVE: The aim of this study is to analyze the transition of the epidemic from subexponential to exponential transmission in the Chennai metro zone and to analyze the probability of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) secondary infections while availing the public transport systems in the city. METHODS: A single geographical zone “Chennai-Metro-Merge” was constructed by combining Chennai District with three bordering districts. Subexponential and exponential models were developed to analyze and predict the progression of the COVID-19 epidemic. Probabilistic models were applied to assess the probability of secondary infections while availing public transport after the release of the lockdown. RESULTS: The model predicted that transition from subexponential to exponential transmission occurs around the eighth week after the reporting of a cluster of cases. The probability of secondary infections with a single index case in an enclosure of the city bus, the suburban train general coach, and the ladies coach was found to be 0.192, 0.074, and 0.114, respectively. CONCLUSIONS: Nowcasting at the early stage of the epidemic predicts the probable time point of the exponential transmission and alerts the public health system. After the lockdown release, public transportation will be the major source of SARS-CoV-2 transmission in metro cities, and appropriate strategies based on nowcasting are needed. JMIR Publications 2020-09-18 /pmc/articles/PMC7505694/ /pubmed/32609621 http://dx.doi.org/10.2196/21152 Text en ©Kamalanand Krishnamurthy, Bakiya Ambikapathy, Ashwani Kumar, Lourduraj De Britto. Originally published in JMIR Public Health and Surveillance (http://publichealth.jmir.org), 18.09.2020. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work, first published in JMIR Public Health and Surveillance, is properly cited. The complete bibliographic information, a link to the original publication on http://publichealth.jmir.org, as well as this copyright and license information must be included.
spellingShingle Original Paper
Krishnamurthy, Kamalanand
Ambikapathy, Bakiya
Kumar, Ashwani
Britto, Lourduraj De
Prediction of the Transition From Subexponential to the Exponential Transmission of SARS-CoV-2 in Chennai, India: Epidemic Nowcasting
title Prediction of the Transition From Subexponential to the Exponential Transmission of SARS-CoV-2 in Chennai, India: Epidemic Nowcasting
title_full Prediction of the Transition From Subexponential to the Exponential Transmission of SARS-CoV-2 in Chennai, India: Epidemic Nowcasting
title_fullStr Prediction of the Transition From Subexponential to the Exponential Transmission of SARS-CoV-2 in Chennai, India: Epidemic Nowcasting
title_full_unstemmed Prediction of the Transition From Subexponential to the Exponential Transmission of SARS-CoV-2 in Chennai, India: Epidemic Nowcasting
title_short Prediction of the Transition From Subexponential to the Exponential Transmission of SARS-CoV-2 in Chennai, India: Epidemic Nowcasting
title_sort prediction of the transition from subexponential to the exponential transmission of sars-cov-2 in chennai, india: epidemic nowcasting
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7505694/
https://www.ncbi.nlm.nih.gov/pubmed/32609621
http://dx.doi.org/10.2196/21152
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