Cargando…

Leaf Angle eXtractor: A high‐throughput image processing framework for leaf angle measurements in maize and sorghum

PREMISE: Maize yields have significantly increased over the past half‐century owing to advances in breeding and agronomic practices. Plants have been grown in increasingly higher densities due to changes in plant architecture resulting in plants with more upright leaves, which allows more efficient...

Descripción completa

Detalles Bibliográficos
Autores principales: Kenchanmane Raju, Sunil K., Adkins, Miles, Enersen, Alex, Santana de Carvalho, Daniel, Studer, Anthony J., Ganapathysubramanian, Baskar, Schnable, Patrick S., Schnable, James C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7507698/
https://www.ncbi.nlm.nih.gov/pubmed/32999772
http://dx.doi.org/10.1002/aps3.11385
_version_ 1783585281279000576
author Kenchanmane Raju, Sunil K.
Adkins, Miles
Enersen, Alex
Santana de Carvalho, Daniel
Studer, Anthony J.
Ganapathysubramanian, Baskar
Schnable, Patrick S.
Schnable, James C.
author_facet Kenchanmane Raju, Sunil K.
Adkins, Miles
Enersen, Alex
Santana de Carvalho, Daniel
Studer, Anthony J.
Ganapathysubramanian, Baskar
Schnable, Patrick S.
Schnable, James C.
author_sort Kenchanmane Raju, Sunil K.
collection PubMed
description PREMISE: Maize yields have significantly increased over the past half‐century owing to advances in breeding and agronomic practices. Plants have been grown in increasingly higher densities due to changes in plant architecture resulting in plants with more upright leaves, which allows more efficient light interception for photosynthesis. Natural variation for leaf angle has been identified in maize and sorghum using multiple mapping populations. However, conventional phenotyping techniques for leaf angle are low throughput and labor intensive, and therefore hinder a mechanistic understanding of how the leaf angle of individual leaves changes over time in response to the environment. METHODS: High‐throughput time series image data from water‐deprived maize (Zea mays subsp. mays) and sorghum (Sorghum bicolor) were obtained using battery‐powered time‐lapse cameras. A MATLAB‐based image processing framework, Leaf Angle eXtractor (LAX), was developed to extract and quantify leaf angles from images of maize and sorghum plants under drought conditions. RESULTS: Leaf angle measurements showed differences in leaf responses to drought in maize and sorghum. Tracking leaf angle changes at intervals as short as one minute enabled distinguishing leaves that showed signs of wilting under water deprivation from other leaves on the same plant that did not show wilting during the same time period. DISCUSSION: Automating leaf angle measurements using LAX makes it feasible to perform large‐scale experiments to evaluate, understand, and exploit the spatial and temporal variations in plant response to water limitations.
format Online
Article
Text
id pubmed-7507698
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-75076982020-09-29 Leaf Angle eXtractor: A high‐throughput image processing framework for leaf angle measurements in maize and sorghum Kenchanmane Raju, Sunil K. Adkins, Miles Enersen, Alex Santana de Carvalho, Daniel Studer, Anthony J. Ganapathysubramanian, Baskar Schnable, Patrick S. Schnable, James C. Appl Plant Sci Software Notes PREMISE: Maize yields have significantly increased over the past half‐century owing to advances in breeding and agronomic practices. Plants have been grown in increasingly higher densities due to changes in plant architecture resulting in plants with more upright leaves, which allows more efficient light interception for photosynthesis. Natural variation for leaf angle has been identified in maize and sorghum using multiple mapping populations. However, conventional phenotyping techniques for leaf angle are low throughput and labor intensive, and therefore hinder a mechanistic understanding of how the leaf angle of individual leaves changes over time in response to the environment. METHODS: High‐throughput time series image data from water‐deprived maize (Zea mays subsp. mays) and sorghum (Sorghum bicolor) were obtained using battery‐powered time‐lapse cameras. A MATLAB‐based image processing framework, Leaf Angle eXtractor (LAX), was developed to extract and quantify leaf angles from images of maize and sorghum plants under drought conditions. RESULTS: Leaf angle measurements showed differences in leaf responses to drought in maize and sorghum. Tracking leaf angle changes at intervals as short as one minute enabled distinguishing leaves that showed signs of wilting under water deprivation from other leaves on the same plant that did not show wilting during the same time period. DISCUSSION: Automating leaf angle measurements using LAX makes it feasible to perform large‐scale experiments to evaluate, understand, and exploit the spatial and temporal variations in plant response to water limitations. John Wiley and Sons Inc. 2020-09-10 /pmc/articles/PMC7507698/ /pubmed/32999772 http://dx.doi.org/10.1002/aps3.11385 Text en © 2020 Kenchanmane Raju et al. Applications in Plant Sciences published by Wiley Periodicals LLC on behalf of Botanical Society of America This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software Notes
Kenchanmane Raju, Sunil K.
Adkins, Miles
Enersen, Alex
Santana de Carvalho, Daniel
Studer, Anthony J.
Ganapathysubramanian, Baskar
Schnable, Patrick S.
Schnable, James C.
Leaf Angle eXtractor: A high‐throughput image processing framework for leaf angle measurements in maize and sorghum
title Leaf Angle eXtractor: A high‐throughput image processing framework for leaf angle measurements in maize and sorghum
title_full Leaf Angle eXtractor: A high‐throughput image processing framework for leaf angle measurements in maize and sorghum
title_fullStr Leaf Angle eXtractor: A high‐throughput image processing framework for leaf angle measurements in maize and sorghum
title_full_unstemmed Leaf Angle eXtractor: A high‐throughput image processing framework for leaf angle measurements in maize and sorghum
title_short Leaf Angle eXtractor: A high‐throughput image processing framework for leaf angle measurements in maize and sorghum
title_sort leaf angle extractor: a high‐throughput image processing framework for leaf angle measurements in maize and sorghum
topic Software Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7507698/
https://www.ncbi.nlm.nih.gov/pubmed/32999772
http://dx.doi.org/10.1002/aps3.11385
work_keys_str_mv AT kenchanmanerajusunilk leafangleextractorahighthroughputimageprocessingframeworkforleafanglemeasurementsinmaizeandsorghum
AT adkinsmiles leafangleextractorahighthroughputimageprocessingframeworkforleafanglemeasurementsinmaizeandsorghum
AT enersenalex leafangleextractorahighthroughputimageprocessingframeworkforleafanglemeasurementsinmaizeandsorghum
AT santanadecarvalhodaniel leafangleextractorahighthroughputimageprocessingframeworkforleafanglemeasurementsinmaizeandsorghum
AT studeranthonyj leafangleextractorahighthroughputimageprocessingframeworkforleafanglemeasurementsinmaizeandsorghum
AT ganapathysubramanianbaskar leafangleextractorahighthroughputimageprocessingframeworkforleafanglemeasurementsinmaizeandsorghum
AT schnablepatricks leafangleextractorahighthroughputimageprocessingframeworkforleafanglemeasurementsinmaizeandsorghum
AT schnablejamesc leafangleextractorahighthroughputimageprocessingframeworkforleafanglemeasurementsinmaizeandsorghum