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Measuring transverse relaxation in highly paramagnetic systems
The enhancement of nuclear relaxation rates due to the interaction with a paramagnetic center (known as Paramagnetic Relaxation Enhancement) is a powerful source of structural and dynamics information, widely used in structural biology. However, many signals affected by the hyperfine interaction rel...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Netherlands
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7508935/ https://www.ncbi.nlm.nih.gov/pubmed/32710399 http://dx.doi.org/10.1007/s10858-020-00334-w |
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author | Invernici, Michele Trindade, Inês B. Cantini, Francesca Louro, Ricardo O. Piccioli, Mario |
author_facet | Invernici, Michele Trindade, Inês B. Cantini, Francesca Louro, Ricardo O. Piccioli, Mario |
author_sort | Invernici, Michele |
collection | PubMed |
description | The enhancement of nuclear relaxation rates due to the interaction with a paramagnetic center (known as Paramagnetic Relaxation Enhancement) is a powerful source of structural and dynamics information, widely used in structural biology. However, many signals affected by the hyperfine interaction relax faster than the evolution periods of common NMR experiments and therefore they are broadened beyond detection. This gives rise to a so-called blind sphere around the paramagnetic center, which is a major limitation in the use of PREs. Reducing the blind sphere is extremely important in paramagnetic metalloproteins. The identification, characterization, and proper structural restraining of the first coordination sphere of the metal ion(s) and its immediate neighboring regions is key to understand their biological function. The novel HSQC scheme we propose here, that we termed R(2)-weighted, HSQC-AP, achieves this aim by detecting signals that escaped detection in a conventional HSQC experiment and provides fully reliable R(2) values in the range of (1)H R(2) rates ca. 50–400 s(−1). Independently on the type of paramagnetic center and on the size of the molecule, this experiment decreases the radius of the blind sphere and increases the number of detectable PREs. Here, we report the validation of this approach for the case of PioC, a small protein containing a high potential 4Fe-4S cluster in the reduced [Fe(4)S(4)](2+) form. The blind sphere was contracted to a minimal extent, enabling the measurement of R(2) rates for the cluster coordinating residues. |
format | Online Article Text |
id | pubmed-7508935 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Springer Netherlands |
record_format | MEDLINE/PubMed |
spelling | pubmed-75089352020-10-05 Measuring transverse relaxation in highly paramagnetic systems Invernici, Michele Trindade, Inês B. Cantini, Francesca Louro, Ricardo O. Piccioli, Mario J Biomol NMR Article The enhancement of nuclear relaxation rates due to the interaction with a paramagnetic center (known as Paramagnetic Relaxation Enhancement) is a powerful source of structural and dynamics information, widely used in structural biology. However, many signals affected by the hyperfine interaction relax faster than the evolution periods of common NMR experiments and therefore they are broadened beyond detection. This gives rise to a so-called blind sphere around the paramagnetic center, which is a major limitation in the use of PREs. Reducing the blind sphere is extremely important in paramagnetic metalloproteins. The identification, characterization, and proper structural restraining of the first coordination sphere of the metal ion(s) and its immediate neighboring regions is key to understand their biological function. The novel HSQC scheme we propose here, that we termed R(2)-weighted, HSQC-AP, achieves this aim by detecting signals that escaped detection in a conventional HSQC experiment and provides fully reliable R(2) values in the range of (1)H R(2) rates ca. 50–400 s(−1). Independently on the type of paramagnetic center and on the size of the molecule, this experiment decreases the radius of the blind sphere and increases the number of detectable PREs. Here, we report the validation of this approach for the case of PioC, a small protein containing a high potential 4Fe-4S cluster in the reduced [Fe(4)S(4)](2+) form. The blind sphere was contracted to a minimal extent, enabling the measurement of R(2) rates for the cluster coordinating residues. Springer Netherlands 2020-07-24 2020 /pmc/articles/PMC7508935/ /pubmed/32710399 http://dx.doi.org/10.1007/s10858-020-00334-w Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Invernici, Michele Trindade, Inês B. Cantini, Francesca Louro, Ricardo O. Piccioli, Mario Measuring transverse relaxation in highly paramagnetic systems |
title | Measuring transverse relaxation in highly paramagnetic systems |
title_full | Measuring transverse relaxation in highly paramagnetic systems |
title_fullStr | Measuring transverse relaxation in highly paramagnetic systems |
title_full_unstemmed | Measuring transverse relaxation in highly paramagnetic systems |
title_short | Measuring transverse relaxation in highly paramagnetic systems |
title_sort | measuring transverse relaxation in highly paramagnetic systems |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7508935/ https://www.ncbi.nlm.nih.gov/pubmed/32710399 http://dx.doi.org/10.1007/s10858-020-00334-w |
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