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Chloroplast genome for Crataegus pinnatifida (Rosaceae) and phylogenetic analyses with its coordinal species
Crataegus pinnatifida is an important medicinal and edible plant. Now, the complete chloroplast (cp) genome of C. pinnatifida was assembled and annotated. The cp genome of C. pinnatifida was 159,898 bp and contained two short inverted repeat regions (26,540 bp) which were separated by a small single...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510473/ https://www.ncbi.nlm.nih.gov/pubmed/33366930 http://dx.doi.org/10.1080/23802359.2019.1667273 |
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author | He, Shui-Lian Xie, Jing Yang, Yang Tian, Yang |
author_facet | He, Shui-Lian Xie, Jing Yang, Yang Tian, Yang |
author_sort | He, Shui-Lian |
collection | PubMed |
description | Crataegus pinnatifida is an important medicinal and edible plant. Now, the complete chloroplast (cp) genome of C. pinnatifida was assembled and annotated. The cp genome of C. pinnatifida was 159,898 bp and contained two short inverted repeat regions (26,540 bp) which were separated by a small single copy region (19,219 bp) and a large single copyregion (87,599 bp). The cp genome encodes 109 unique genes, including 75 protein-coding genes, 30 transfer RNA genes and 4 ribosomal RNA genes. The topology of the phylogenetic tree showed that C. pinnatifida has a close relationship with species Eriobotrya, Sorbus, Pyrus, Mulus, and Chaenomeles. |
format | Online Article Text |
id | pubmed-7510473 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-75104732020-12-22 Chloroplast genome for Crataegus pinnatifida (Rosaceae) and phylogenetic analyses with its coordinal species He, Shui-Lian Xie, Jing Yang, Yang Tian, Yang Mitochondrial DNA B Resour Mitogenome Announcement Crataegus pinnatifida is an important medicinal and edible plant. Now, the complete chloroplast (cp) genome of C. pinnatifida was assembled and annotated. The cp genome of C. pinnatifida was 159,898 bp and contained two short inverted repeat regions (26,540 bp) which were separated by a small single copy region (19,219 bp) and a large single copyregion (87,599 bp). The cp genome encodes 109 unique genes, including 75 protein-coding genes, 30 transfer RNA genes and 4 ribosomal RNA genes. The topology of the phylogenetic tree showed that C. pinnatifida has a close relationship with species Eriobotrya, Sorbus, Pyrus, Mulus, and Chaenomeles. Taylor & Francis 2020-05-18 /pmc/articles/PMC7510473/ /pubmed/33366930 http://dx.doi.org/10.1080/23802359.2019.1667273 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement He, Shui-Lian Xie, Jing Yang, Yang Tian, Yang Chloroplast genome for Crataegus pinnatifida (Rosaceae) and phylogenetic analyses with its coordinal species |
title | Chloroplast genome for Crataegus pinnatifida (Rosaceae) and phylogenetic analyses with its coordinal species |
title_full | Chloroplast genome for Crataegus pinnatifida (Rosaceae) and phylogenetic analyses with its coordinal species |
title_fullStr | Chloroplast genome for Crataegus pinnatifida (Rosaceae) and phylogenetic analyses with its coordinal species |
title_full_unstemmed | Chloroplast genome for Crataegus pinnatifida (Rosaceae) and phylogenetic analyses with its coordinal species |
title_short | Chloroplast genome for Crataegus pinnatifida (Rosaceae) and phylogenetic analyses with its coordinal species |
title_sort | chloroplast genome for crataegus pinnatifida (rosaceae) and phylogenetic analyses with its coordinal species |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510473/ https://www.ncbi.nlm.nih.gov/pubmed/33366930 http://dx.doi.org/10.1080/23802359.2019.1667273 |
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