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Characterization of the complete chloroplast genome of Eleutherococcus senticosus (Araliaceae) as an herb in China

Eleutherococcus senticosus is a highly valued woody herb medicinal plant belonging to the family Araliaceae, which is also the popular edible plant in China. In this paper, the chloroplast genome of E. senticosus was completed. The complete chloroplast genome of E. senticosus was 156,768 bp in lengt...

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Autor principal: Tian, Zhuo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510574/
https://www.ncbi.nlm.nih.gov/pubmed/33366946
http://dx.doi.org/10.1080/23802359.2020.1768929
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author Tian, Zhuo
author_facet Tian, Zhuo
author_sort Tian, Zhuo
collection PubMed
description Eleutherococcus senticosus is a highly valued woody herb medicinal plant belonging to the family Araliaceae, which is also the popular edible plant in China. In this paper, the chloroplast genome of E. senticosus was completed. The complete chloroplast genome of E. senticosus was 156,768 bp in length as a circle. It contained a large single-copy (LSC) region of 86,756 bp, a small single- copy (SSC) region of 18,154 bp and separated by two inverted repeat (IR) regions of 25,929 bp. The base compositions of chloroplast genome is uneven and the overall nucleotide composition is: A (30.7%), T (31.4%), C (19.3%) and G (18.6%), with a total G + C content (39.4%). It comprised 134 genes, including 89 protein-coding genes (PCGs), 37 transfer RNA (tRNA) genes and 8 ribosomal RNA (rRNA) genes. 8 PCG genes species, 7 tRNA genes species and 4 rRNA species were found duplicated in the IR regions. The phylogenetic analysis result shown that the chloroplast genome of E. senticosus is closest to Eleutherococcus sessiliflorus of the family Araliaceae in this study by the maximum-likelihood (ML) method. The complete chloroplast genome of E. senticosus can provide more genomics information for further research on the species in China.
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spelling pubmed-75105742020-12-22 Characterization of the complete chloroplast genome of Eleutherococcus senticosus (Araliaceae) as an herb in China Tian, Zhuo Mitochondrial DNA B Resour Mitogenome Announcement Eleutherococcus senticosus is a highly valued woody herb medicinal plant belonging to the family Araliaceae, which is also the popular edible plant in China. In this paper, the chloroplast genome of E. senticosus was completed. The complete chloroplast genome of E. senticosus was 156,768 bp in length as a circle. It contained a large single-copy (LSC) region of 86,756 bp, a small single- copy (SSC) region of 18,154 bp and separated by two inverted repeat (IR) regions of 25,929 bp. The base compositions of chloroplast genome is uneven and the overall nucleotide composition is: A (30.7%), T (31.4%), C (19.3%) and G (18.6%), with a total G + C content (39.4%). It comprised 134 genes, including 89 protein-coding genes (PCGs), 37 transfer RNA (tRNA) genes and 8 ribosomal RNA (rRNA) genes. 8 PCG genes species, 7 tRNA genes species and 4 rRNA species were found duplicated in the IR regions. The phylogenetic analysis result shown that the chloroplast genome of E. senticosus is closest to Eleutherococcus sessiliflorus of the family Araliaceae in this study by the maximum-likelihood (ML) method. The complete chloroplast genome of E. senticosus can provide more genomics information for further research on the species in China. Taylor & Francis 2020-05-20 /pmc/articles/PMC7510574/ /pubmed/33366946 http://dx.doi.org/10.1080/23802359.2020.1768929 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Tian, Zhuo
Characterization of the complete chloroplast genome of Eleutherococcus senticosus (Araliaceae) as an herb in China
title Characterization of the complete chloroplast genome of Eleutherococcus senticosus (Araliaceae) as an herb in China
title_full Characterization of the complete chloroplast genome of Eleutherococcus senticosus (Araliaceae) as an herb in China
title_fullStr Characterization of the complete chloroplast genome of Eleutherococcus senticosus (Araliaceae) as an herb in China
title_full_unstemmed Characterization of the complete chloroplast genome of Eleutherococcus senticosus (Araliaceae) as an herb in China
title_short Characterization of the complete chloroplast genome of Eleutherococcus senticosus (Araliaceae) as an herb in China
title_sort characterization of the complete chloroplast genome of eleutherococcus senticosus (araliaceae) as an herb in china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510574/
https://www.ncbi.nlm.nih.gov/pubmed/33366946
http://dx.doi.org/10.1080/23802359.2020.1768929
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