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Improving the performance of CNN to predict the likelihood of COVID-19 using chest X-ray images with preprocessing algorithms
OBJECTIVE: This study aims to develop and test a new computer-aided diagnosis (CAD) scheme of chest X-ray images to detect coronavirus (COVID-19) infected pneumonia. METHOD: CAD scheme first applies two image preprocessing steps to remove the majority of diaphragm regions, process the original image...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier B.V.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510591/ https://www.ncbi.nlm.nih.gov/pubmed/32992136 http://dx.doi.org/10.1016/j.ijmedinf.2020.104284 |
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author | Heidari, Morteza Mirniaharikandehei, Seyedehnafiseh Khuzani, Abolfazl Zargari Danala, Gopichandh Qiu, Yuchen Zheng, Bin |
author_facet | Heidari, Morteza Mirniaharikandehei, Seyedehnafiseh Khuzani, Abolfazl Zargari Danala, Gopichandh Qiu, Yuchen Zheng, Bin |
author_sort | Heidari, Morteza |
collection | PubMed |
description | OBJECTIVE: This study aims to develop and test a new computer-aided diagnosis (CAD) scheme of chest X-ray images to detect coronavirus (COVID-19) infected pneumonia. METHOD: CAD scheme first applies two image preprocessing steps to remove the majority of diaphragm regions, process the original image using a histogram equalization algorithm, and a bilateral low-pass filter. Then, the original image and two filtered images are used to form a pseudo color image. This image is fed into three input channels of a transfer learning-based convolutional neural network (CNN) model to classify chest X-ray images into 3 classes of COVID-19 infected pneumonia, other community-acquired no-COVID-19 infected pneumonia, and normal (non-pneumonia) cases. To build and test the CNN model, a publicly available dataset involving 8474 chest X-ray images is used, which includes 415, 5179 and 2,880 cases in three classes, respectively. Dataset is randomly divided into 3 subsets namely, training, validation, and testing with respect to the same frequency of cases in each class to train and test the CNN model. RESULTS: The CNN-based CAD scheme yields an overall accuracy of 94.5 % (2404/2544) with a 95 % confidence interval of [0.93,0.96] in classifying 3 classes. CAD also yields 98.4 % sensitivity (124/126) and 98.0 % specificity (2371/2418) in classifying cases with and without COVID-19 infection. However, without using two preprocessing steps, CAD yields a lower classification accuracy of 88.0 % (2239/2544). CONCLUSION: This study demonstrates that adding two image preprocessing steps and generating a pseudo color image plays an important role in developing a deep learning CAD scheme of chest X-ray images to improve accuracy in detecting COVID-19 infected pneumonia. |
format | Online Article Text |
id | pubmed-7510591 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier B.V. |
record_format | MEDLINE/PubMed |
spelling | pubmed-75105912020-09-24 Improving the performance of CNN to predict the likelihood of COVID-19 using chest X-ray images with preprocessing algorithms Heidari, Morteza Mirniaharikandehei, Seyedehnafiseh Khuzani, Abolfazl Zargari Danala, Gopichandh Qiu, Yuchen Zheng, Bin Int J Med Inform Article OBJECTIVE: This study aims to develop and test a new computer-aided diagnosis (CAD) scheme of chest X-ray images to detect coronavirus (COVID-19) infected pneumonia. METHOD: CAD scheme first applies two image preprocessing steps to remove the majority of diaphragm regions, process the original image using a histogram equalization algorithm, and a bilateral low-pass filter. Then, the original image and two filtered images are used to form a pseudo color image. This image is fed into three input channels of a transfer learning-based convolutional neural network (CNN) model to classify chest X-ray images into 3 classes of COVID-19 infected pneumonia, other community-acquired no-COVID-19 infected pneumonia, and normal (non-pneumonia) cases. To build and test the CNN model, a publicly available dataset involving 8474 chest X-ray images is used, which includes 415, 5179 and 2,880 cases in three classes, respectively. Dataset is randomly divided into 3 subsets namely, training, validation, and testing with respect to the same frequency of cases in each class to train and test the CNN model. RESULTS: The CNN-based CAD scheme yields an overall accuracy of 94.5 % (2404/2544) with a 95 % confidence interval of [0.93,0.96] in classifying 3 classes. CAD also yields 98.4 % sensitivity (124/126) and 98.0 % specificity (2371/2418) in classifying cases with and without COVID-19 infection. However, without using two preprocessing steps, CAD yields a lower classification accuracy of 88.0 % (2239/2544). CONCLUSION: This study demonstrates that adding two image preprocessing steps and generating a pseudo color image plays an important role in developing a deep learning CAD scheme of chest X-ray images to improve accuracy in detecting COVID-19 infected pneumonia. Elsevier B.V. 2020-12 2020-09-23 /pmc/articles/PMC7510591/ /pubmed/32992136 http://dx.doi.org/10.1016/j.ijmedinf.2020.104284 Text en © 2020 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active. |
spellingShingle | Article Heidari, Morteza Mirniaharikandehei, Seyedehnafiseh Khuzani, Abolfazl Zargari Danala, Gopichandh Qiu, Yuchen Zheng, Bin Improving the performance of CNN to predict the likelihood of COVID-19 using chest X-ray images with preprocessing algorithms |
title | Improving the performance of CNN to predict the likelihood of COVID-19 using chest X-ray images with preprocessing algorithms |
title_full | Improving the performance of CNN to predict the likelihood of COVID-19 using chest X-ray images with preprocessing algorithms |
title_fullStr | Improving the performance of CNN to predict the likelihood of COVID-19 using chest X-ray images with preprocessing algorithms |
title_full_unstemmed | Improving the performance of CNN to predict the likelihood of COVID-19 using chest X-ray images with preprocessing algorithms |
title_short | Improving the performance of CNN to predict the likelihood of COVID-19 using chest X-ray images with preprocessing algorithms |
title_sort | improving the performance of cnn to predict the likelihood of covid-19 using chest x-ray images with preprocessing algorithms |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510591/ https://www.ncbi.nlm.nih.gov/pubmed/32992136 http://dx.doi.org/10.1016/j.ijmedinf.2020.104284 |
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