The complete chloroplast genome sequence of Carya illinoinensis cv. wichita and its phylogenetic analysis

Carya illinoinensis is an important nut tree with high economic and ecological values. Here, we presented the complete chloroplast (cp) genome sequence of C. illinoinensis cv. wichita. The whole cp genome is 160,532 bp in length, displaying a typical quadripartite structure with a large single-copy...

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Autores principales: Feng, Gang, Mo, Zheng-Hai, Peng, Fang-Ren
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510605/
https://www.ncbi.nlm.nih.gov/pubmed/33366987
http://dx.doi.org/10.1080/23802359.2020.1768925
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author Feng, Gang
Mo, Zheng-Hai
Peng, Fang-Ren
author_facet Feng, Gang
Mo, Zheng-Hai
Peng, Fang-Ren
author_sort Feng, Gang
collection PubMed
description Carya illinoinensis is an important nut tree with high economic and ecological values. Here, we presented the complete chloroplast (cp) genome sequence of C. illinoinensis cv. wichita. The whole cp genome is 160,532 bp in length, displaying a typical quadripartite structure with a large single-copy (LSC) of 897,99 bp, a small single-copy (SSC) region of 18,751 bp, and a pair of inverted repeats (IRs) of 25,991 bp. A total of 128 genes were predicted to contain in the whole cp genome, including 83 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The GC contents of the cp genome is 36.19%. Phylogenomic analysis suggested Carya illinoinensis as a sister species of C. cathayensis, C. kweichowensis, and Annamocarya sinensis.
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spelling pubmed-75106052020-12-22 The complete chloroplast genome sequence of Carya illinoinensis cv. wichita and its phylogenetic analysis Feng, Gang Mo, Zheng-Hai Peng, Fang-Ren Mitochondrial DNA B Resour Mitogenome Announcement Carya illinoinensis is an important nut tree with high economic and ecological values. Here, we presented the complete chloroplast (cp) genome sequence of C. illinoinensis cv. wichita. The whole cp genome is 160,532 bp in length, displaying a typical quadripartite structure with a large single-copy (LSC) of 897,99 bp, a small single-copy (SSC) region of 18,751 bp, and a pair of inverted repeats (IRs) of 25,991 bp. A total of 128 genes were predicted to contain in the whole cp genome, including 83 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The GC contents of the cp genome is 36.19%. Phylogenomic analysis suggested Carya illinoinensis as a sister species of C. cathayensis, C. kweichowensis, and Annamocarya sinensis. Taylor & Francis 2020-06-01 /pmc/articles/PMC7510605/ /pubmed/33366987 http://dx.doi.org/10.1080/23802359.2020.1768925 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Feng, Gang
Mo, Zheng-Hai
Peng, Fang-Ren
The complete chloroplast genome sequence of Carya illinoinensis cv. wichita and its phylogenetic analysis
title The complete chloroplast genome sequence of Carya illinoinensis cv. wichita and its phylogenetic analysis
title_full The complete chloroplast genome sequence of Carya illinoinensis cv. wichita and its phylogenetic analysis
title_fullStr The complete chloroplast genome sequence of Carya illinoinensis cv. wichita and its phylogenetic analysis
title_full_unstemmed The complete chloroplast genome sequence of Carya illinoinensis cv. wichita and its phylogenetic analysis
title_short The complete chloroplast genome sequence of Carya illinoinensis cv. wichita and its phylogenetic analysis
title_sort complete chloroplast genome sequence of carya illinoinensis cv. wichita and its phylogenetic analysis
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510605/
https://www.ncbi.nlm.nih.gov/pubmed/33366987
http://dx.doi.org/10.1080/23802359.2020.1768925
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