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The complete chloroplast genome sequence of Sorbus amabilis (Rosaceae)

Sorbus amabilis Cheng ex Yü, a small excellent ornamental tree species, is only distributed in Eastern China. In this study, we assembled and annotated the complete chloroplast (cp) genome of the species using the next-generation sequencing for the first time. The cp genome was 160,006 bp in size, c...

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Detalles Bibliográficos
Autores principales: Zhang, Xingwang, Xie, Yanping, Xiao, Shuping, Wu, Xiaomin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510610/
https://www.ncbi.nlm.nih.gov/pubmed/33366963
http://dx.doi.org/10.1080/23802359.2020.1768951
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author Zhang, Xingwang
Xie, Yanping
Xiao, Shuping
Wu, Xiaomin
author_facet Zhang, Xingwang
Xie, Yanping
Xiao, Shuping
Wu, Xiaomin
author_sort Zhang, Xingwang
collection PubMed
description Sorbus amabilis Cheng ex Yü, a small excellent ornamental tree species, is only distributed in Eastern China. In this study, we assembled and annotated the complete chloroplast (cp) genome of the species using the next-generation sequencing for the first time. The cp genome was 160,006 bp in size, consisting of two copies of invert repeat (IR) regions of 26,405 bp, one large single-copy (LSC) region of 87,870bp, and one small single-copy (SSC) region of 19,326 bp. The overall GC content of the genome was 36.55%. The genome was predicted to contain 128 genes, including 88 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic analysis of 25 chloroplast genomes in Rosaceae indicated that S. amabilis is most closely related to S. commixta. These findings may provide useful information to the phylogeny of the genus Sorbus.
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spelling pubmed-75106102020-12-22 The complete chloroplast genome sequence of Sorbus amabilis (Rosaceae) Zhang, Xingwang Xie, Yanping Xiao, Shuping Wu, Xiaomin Mitochondrial DNA B Resour Mitogenome Announcement Sorbus amabilis Cheng ex Yü, a small excellent ornamental tree species, is only distributed in Eastern China. In this study, we assembled and annotated the complete chloroplast (cp) genome of the species using the next-generation sequencing for the first time. The cp genome was 160,006 bp in size, consisting of two copies of invert repeat (IR) regions of 26,405 bp, one large single-copy (LSC) region of 87,870bp, and one small single-copy (SSC) region of 19,326 bp. The overall GC content of the genome was 36.55%. The genome was predicted to contain 128 genes, including 88 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic analysis of 25 chloroplast genomes in Rosaceae indicated that S. amabilis is most closely related to S. commixta. These findings may provide useful information to the phylogeny of the genus Sorbus. Taylor & Francis 2020-05-27 /pmc/articles/PMC7510610/ /pubmed/33366963 http://dx.doi.org/10.1080/23802359.2020.1768951 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Zhang, Xingwang
Xie, Yanping
Xiao, Shuping
Wu, Xiaomin
The complete chloroplast genome sequence of Sorbus amabilis (Rosaceae)
title The complete chloroplast genome sequence of Sorbus amabilis (Rosaceae)
title_full The complete chloroplast genome sequence of Sorbus amabilis (Rosaceae)
title_fullStr The complete chloroplast genome sequence of Sorbus amabilis (Rosaceae)
title_full_unstemmed The complete chloroplast genome sequence of Sorbus amabilis (Rosaceae)
title_short The complete chloroplast genome sequence of Sorbus amabilis (Rosaceae)
title_sort complete chloroplast genome sequence of sorbus amabilis (rosaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510610/
https://www.ncbi.nlm.nih.gov/pubmed/33366963
http://dx.doi.org/10.1080/23802359.2020.1768951
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