Complete chloroplast genome sequence of an endangered Ottelia cordata and its phylogenetic analysis

Ottelia cordata is a typical submerged plant to the family of hydrocharitaceae. In this work, complete chloroplast genome of O. cordata was assembled and characterized from high-throughput Illumina sequencing data. The chloroplasgenome of O. cordatais 157,869bp in length. The O. cordata cp genome en...

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Autores principales: Zhang, Qingfeng, Shen, Zhixin, Li, Fangyuan, Li, Gaojun, Shen, Jie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510642/
https://www.ncbi.nlm.nih.gov/pubmed/33366975
http://dx.doi.org/10.1080/23802359.2020.1768921
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author Zhang, Qingfeng
Shen, Zhixin
Li, Fangyuan
Li, Gaojun
Shen, Jie
author_facet Zhang, Qingfeng
Shen, Zhixin
Li, Fangyuan
Li, Gaojun
Shen, Jie
author_sort Zhang, Qingfeng
collection PubMed
description Ottelia cordata is a typical submerged plant to the family of hydrocharitaceae. In this work, complete chloroplast genome of O. cordata was assembled and characterized from high-throughput Illumina sequencing data. The chloroplasgenome of O. cordatais 157,869bp in length. The O. cordata cp genome encodes 128 functional genes, including 85 protein-coding genes, 35 tRNA genes, and 8 rRNA genes. The GC content of the genome was 36,57%. Its nucleotide composition is asymmetric with an overall A + T content of 63.44%. Phylogenetic analysis indicated that O. cordata is closely related to the Elodea. These results could offer molecular markers and helpful in understanding about the role of O. cordata evolution and protection.
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spelling pubmed-75106422020-12-22 Complete chloroplast genome sequence of an endangered Ottelia cordata and its phylogenetic analysis Zhang, Qingfeng Shen, Zhixin Li, Fangyuan Li, Gaojun Shen, Jie Mitochondrial DNA B Resour Mitogenome Announcement Ottelia cordata is a typical submerged plant to the family of hydrocharitaceae. In this work, complete chloroplast genome of O. cordata was assembled and characterized from high-throughput Illumina sequencing data. The chloroplasgenome of O. cordatais 157,869bp in length. The O. cordata cp genome encodes 128 functional genes, including 85 protein-coding genes, 35 tRNA genes, and 8 rRNA genes. The GC content of the genome was 36,57%. Its nucleotide composition is asymmetric with an overall A + T content of 63.44%. Phylogenetic analysis indicated that O. cordata is closely related to the Elodea. These results could offer molecular markers and helpful in understanding about the role of O. cordata evolution and protection. Taylor & Francis 2020-05-28 /pmc/articles/PMC7510642/ /pubmed/33366975 http://dx.doi.org/10.1080/23802359.2020.1768921 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Zhang, Qingfeng
Shen, Zhixin
Li, Fangyuan
Li, Gaojun
Shen, Jie
Complete chloroplast genome sequence of an endangered Ottelia cordata and its phylogenetic analysis
title Complete chloroplast genome sequence of an endangered Ottelia cordata and its phylogenetic analysis
title_full Complete chloroplast genome sequence of an endangered Ottelia cordata and its phylogenetic analysis
title_fullStr Complete chloroplast genome sequence of an endangered Ottelia cordata and its phylogenetic analysis
title_full_unstemmed Complete chloroplast genome sequence of an endangered Ottelia cordata and its phylogenetic analysis
title_short Complete chloroplast genome sequence of an endangered Ottelia cordata and its phylogenetic analysis
title_sort complete chloroplast genome sequence of an endangered ottelia cordata and its phylogenetic analysis
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510642/
https://www.ncbi.nlm.nih.gov/pubmed/33366975
http://dx.doi.org/10.1080/23802359.2020.1768921
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