Complete chloroplast genome sequence of Ampelocalamus scandens (Arundinarodae)

Ampelocalamus scandens is native to Guizhou Province, China, and grows at an altitude of 260–320 m. It can be used as a raw material for weaving and papermaking. In the current study, the complete chloroplast (cp) genome of A. scandens was sequenced and is reported for the first time. The complete c...

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Autores principales: Fan, Lili, Zhang, Yangyang, Tarin, Muhammad Waqqas Khan, He, Tianyou, Rong, Jundong, Zheng, Yushan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510662/
https://www.ncbi.nlm.nih.gov/pubmed/33366988
http://dx.doi.org/10.1080/23802359.2020.1768939
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author Fan, Lili
Zhang, Yangyang
Tarin, Muhammad Waqqas Khan
He, Tianyou
Rong, Jundong
Zheng, Yushan
author_facet Fan, Lili
Zhang, Yangyang
Tarin, Muhammad Waqqas Khan
He, Tianyou
Rong, Jundong
Zheng, Yushan
author_sort Fan, Lili
collection PubMed
description Ampelocalamus scandens is native to Guizhou Province, China, and grows at an altitude of 260–320 m. It can be used as a raw material for weaving and papermaking. In the current study, the complete chloroplast (cp) genome of A. scandens was sequenced and is reported for the first time. The complete cp sequence was 139,504 bp, include large single-copy (LSC), small single-copy (SSC), and a pair of invert repeats (IR) region of 83,103 bp, 12,813 bp, and 21,793 bp, respectively. Besides, the plastid genome comprised a total of 132 genes, including protein-coding, tRNA, and rRNA genes as 85, 39, and 8 genes, respectively. Phylogenetic analysis based on 28 cp genomes reveals that A. scandens is closely associated with Ampelocalamus melicoideus in Arundinarodae.
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spelling pubmed-75106622020-12-22 Complete chloroplast genome sequence of Ampelocalamus scandens (Arundinarodae) Fan, Lili Zhang, Yangyang Tarin, Muhammad Waqqas Khan He, Tianyou Rong, Jundong Zheng, Yushan Mitochondrial DNA B Resour Mitogenome Announcement Ampelocalamus scandens is native to Guizhou Province, China, and grows at an altitude of 260–320 m. It can be used as a raw material for weaving and papermaking. In the current study, the complete chloroplast (cp) genome of A. scandens was sequenced and is reported for the first time. The complete cp sequence was 139,504 bp, include large single-copy (LSC), small single-copy (SSC), and a pair of invert repeats (IR) region of 83,103 bp, 12,813 bp, and 21,793 bp, respectively. Besides, the plastid genome comprised a total of 132 genes, including protein-coding, tRNA, and rRNA genes as 85, 39, and 8 genes, respectively. Phylogenetic analysis based on 28 cp genomes reveals that A. scandens is closely associated with Ampelocalamus melicoideus in Arundinarodae. Taylor & Francis 2020-06-01 /pmc/articles/PMC7510662/ /pubmed/33366988 http://dx.doi.org/10.1080/23802359.2020.1768939 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Fan, Lili
Zhang, Yangyang
Tarin, Muhammad Waqqas Khan
He, Tianyou
Rong, Jundong
Zheng, Yushan
Complete chloroplast genome sequence of Ampelocalamus scandens (Arundinarodae)
title Complete chloroplast genome sequence of Ampelocalamus scandens (Arundinarodae)
title_full Complete chloroplast genome sequence of Ampelocalamus scandens (Arundinarodae)
title_fullStr Complete chloroplast genome sequence of Ampelocalamus scandens (Arundinarodae)
title_full_unstemmed Complete chloroplast genome sequence of Ampelocalamus scandens (Arundinarodae)
title_short Complete chloroplast genome sequence of Ampelocalamus scandens (Arundinarodae)
title_sort complete chloroplast genome sequence of ampelocalamus scandens (arundinarodae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510662/
https://www.ncbi.nlm.nih.gov/pubmed/33366988
http://dx.doi.org/10.1080/23802359.2020.1768939
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