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Complete plastome sequence of Dillenia indica linn. (Dilleniaceae): an Endangered (EN) species in South China

Dillenia indica Linn. is an endangered plant species occurring in southern Guangxi province and Yunnan province of China, which has been grown in gardens as an ornamental plant and is widely used in the medical field. Here, we report and characterize the complete plastid genome sequence of D. indica...

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Autores principales: Tan, Xin-Hang, Wang, Jian-Hua, Zhao, Kun-Kun, Zhu, Zhi-Xin, Wang, Hua-Feng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510670/
https://www.ncbi.nlm.nih.gov/pubmed/33365417
http://dx.doi.org/10.1080/23802359.2018.1536454
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author Tan, Xin-Hang
Wang, Jian-Hua
Zhao, Kun-Kun
Zhu, Zhi-Xin
Wang, Hua-Feng
author_facet Tan, Xin-Hang
Wang, Jian-Hua
Zhao, Kun-Kun
Zhu, Zhi-Xin
Wang, Hua-Feng
author_sort Tan, Xin-Hang
collection PubMed
description Dillenia indica Linn. is an endangered plant species occurring in southern Guangxi province and Yunnan province of China, which has been grown in gardens as an ornamental plant and is widely used in the medical field. Here, we report and characterize the complete plastid genome sequence of D. indica to provide genomic resources useful for promoting its conservation. The complete plastome is 159,266 bp in length and contains the typical structure and gene content of angiosperm plastome, including two inverted repeat (IR) regions of 26,457 bp, a large single-copy (LSC) region of 88,305 bp, and a small single-copy (SSC) region of 18,047 bp. The plastome contains 115 genes, consisting of 81 unique protein-coding genes, 30 unique tRNA genes, and 4 unique rRNA genes (5S rRNA, 4.5S rRNA, 23S rRNA, and 16S rRNA). The overall A/T content in the plastome of D. indica is 63.40%. The complete plastome sequence of D. indica will provide a useful resource for the conservation genetics of this species as well as for the phylogenetic studies of Dilleniaceae.
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spelling pubmed-75106702020-12-22 Complete plastome sequence of Dillenia indica linn. (Dilleniaceae): an Endangered (EN) species in South China Tan, Xin-Hang Wang, Jian-Hua Zhao, Kun-Kun Zhu, Zhi-Xin Wang, Hua-Feng Mitochondrial DNA B Resour Mitogenome Announcement Dillenia indica Linn. is an endangered plant species occurring in southern Guangxi province and Yunnan province of China, which has been grown in gardens as an ornamental plant and is widely used in the medical field. Here, we report and characterize the complete plastid genome sequence of D. indica to provide genomic resources useful for promoting its conservation. The complete plastome is 159,266 bp in length and contains the typical structure and gene content of angiosperm plastome, including two inverted repeat (IR) regions of 26,457 bp, a large single-copy (LSC) region of 88,305 bp, and a small single-copy (SSC) region of 18,047 bp. The plastome contains 115 genes, consisting of 81 unique protein-coding genes, 30 unique tRNA genes, and 4 unique rRNA genes (5S rRNA, 4.5S rRNA, 23S rRNA, and 16S rRNA). The overall A/T content in the plastome of D. indica is 63.40%. The complete plastome sequence of D. indica will provide a useful resource for the conservation genetics of this species as well as for the phylogenetic studies of Dilleniaceae. Taylor & Francis 2018-11-25 /pmc/articles/PMC7510670/ /pubmed/33365417 http://dx.doi.org/10.1080/23802359.2018.1536454 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Tan, Xin-Hang
Wang, Jian-Hua
Zhao, Kun-Kun
Zhu, Zhi-Xin
Wang, Hua-Feng
Complete plastome sequence of Dillenia indica linn. (Dilleniaceae): an Endangered (EN) species in South China
title Complete plastome sequence of Dillenia indica linn. (Dilleniaceae): an Endangered (EN) species in South China
title_full Complete plastome sequence of Dillenia indica linn. (Dilleniaceae): an Endangered (EN) species in South China
title_fullStr Complete plastome sequence of Dillenia indica linn. (Dilleniaceae): an Endangered (EN) species in South China
title_full_unstemmed Complete plastome sequence of Dillenia indica linn. (Dilleniaceae): an Endangered (EN) species in South China
title_short Complete plastome sequence of Dillenia indica linn. (Dilleniaceae): an Endangered (EN) species in South China
title_sort complete plastome sequence of dillenia indica linn. (dilleniaceae): an endangered (en) species in south china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510670/
https://www.ncbi.nlm.nih.gov/pubmed/33365417
http://dx.doi.org/10.1080/23802359.2018.1536454
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