Characterization of the complete chloroplast genome of Alsophila spinulosa, an endangered species endemic to China

Tree fern Alsophila spinulosa is an endangered relic plant in the world. It is currently on the International Union for Conservation of Nature (IUCN) red list of threatened species. In this study, we first assembled the complete chloroplast (cp) genome of A. spinulosa by Illumina paired-end reads da...

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Autores principales: Ma, Yiyong, Jiao, Peng, Qi, Zhuo, Jiang, Zhenzhong, Guan, Shuyan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510675/
https://www.ncbi.nlm.nih.gov/pubmed/33367000
http://dx.doi.org/10.1080/23802359.2020.1772142
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author Ma, Yiyong
Jiao, Peng
Qi, Zhuo
Jiang, Zhenzhong
Guan, Shuyan
author_facet Ma, Yiyong
Jiao, Peng
Qi, Zhuo
Jiang, Zhenzhong
Guan, Shuyan
author_sort Ma, Yiyong
collection PubMed
description Tree fern Alsophila spinulosa is an endangered relic plant in the world. It is currently on the International Union for Conservation of Nature (IUCN) red list of threatened species. In this study, we first assembled the complete chloroplast (cp) genome of A. spinulosa by Illumina paired-end reads data. The whole genome was 156,661 bp, consisting of a pair of inverted repeats of 24,364 bp, large single copy region and a small single copy region (70,352 and 21,624 bp in length, respectively). The cp genome contained 133 genes, including 92 protein-coding genes, 33 trRNA genes, and eight rRNA genes. The overall GC content of the whole genome was 40.4%. A neighbour-joining phylogenetic analysis demonstrated a close relationship between A. spinulosa and Cystoathyrium chinense Ching.
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spelling pubmed-75106752020-12-22 Characterization of the complete chloroplast genome of Alsophila spinulosa, an endangered species endemic to China Ma, Yiyong Jiao, Peng Qi, Zhuo Jiang, Zhenzhong Guan, Shuyan Mitochondrial DNA B Resour Mitogenome Announcement Tree fern Alsophila spinulosa is an endangered relic plant in the world. It is currently on the International Union for Conservation of Nature (IUCN) red list of threatened species. In this study, we first assembled the complete chloroplast (cp) genome of A. spinulosa by Illumina paired-end reads data. The whole genome was 156,661 bp, consisting of a pair of inverted repeats of 24,364 bp, large single copy region and a small single copy region (70,352 and 21,624 bp in length, respectively). The cp genome contained 133 genes, including 92 protein-coding genes, 33 trRNA genes, and eight rRNA genes. The overall GC content of the whole genome was 40.4%. A neighbour-joining phylogenetic analysis demonstrated a close relationship between A. spinulosa and Cystoathyrium chinense Ching. Taylor & Francis 2020-06-01 /pmc/articles/PMC7510675/ /pubmed/33367000 http://dx.doi.org/10.1080/23802359.2020.1772142 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Ma, Yiyong
Jiao, Peng
Qi, Zhuo
Jiang, Zhenzhong
Guan, Shuyan
Characterization of the complete chloroplast genome of Alsophila spinulosa, an endangered species endemic to China
title Characterization of the complete chloroplast genome of Alsophila spinulosa, an endangered species endemic to China
title_full Characterization of the complete chloroplast genome of Alsophila spinulosa, an endangered species endemic to China
title_fullStr Characterization of the complete chloroplast genome of Alsophila spinulosa, an endangered species endemic to China
title_full_unstemmed Characterization of the complete chloroplast genome of Alsophila spinulosa, an endangered species endemic to China
title_short Characterization of the complete chloroplast genome of Alsophila spinulosa, an endangered species endemic to China
title_sort characterization of the complete chloroplast genome of alsophila spinulosa, an endangered species endemic to china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510675/
https://www.ncbi.nlm.nih.gov/pubmed/33367000
http://dx.doi.org/10.1080/23802359.2020.1772142
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