Chloroplast genome and phylogenetic analyses of Poncirus trifoliata (Rutaceae)

Poncirus trifoliata is an important medicinal plant that is used to treat human diseases. In this study, the complete chloroplast (cp) genome of P. trifoliata was assembled based on the Illumina sequencing reads. The cp genome of P. trifoliata was 160,260 bp and contained two short inverted repeat r...

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Autores principales: He, Shui-Lian, Tian, Yang, Yang, Yang, Shi, Chong-Ying
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcements
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510678/
https://www.ncbi.nlm.nih.gov/pubmed/33366973
http://dx.doi.org/10.1080/23802359.2019.1687023
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author He, Shui-Lian
Tian, Yang
Yang, Yang
Shi, Chong-Ying
author_facet He, Shui-Lian
Tian, Yang
Yang, Yang
Shi, Chong-Ying
author_sort He, Shui-Lian
collection PubMed
description Poncirus trifoliata is an important medicinal plant that is used to treat human diseases. In this study, the complete chloroplast (cp) genome of P. trifoliata was assembled based on the Illumina sequencing reads. The cp genome of P. trifoliata was 160,260 bp and contained two short inverted repeat regions (27,029 bp) which were separated by a small single copy region (18,760 bp) and a large single copy region (87,442 bp). The cp genome encodes 113 unique genes, including 79 protein-coding genes, 30 transfer RNA genes and 4 ribosomal RNA genes. The topology of the phylogenetic tree showed that P. trifoliata is closely clustered with genus Citrus.
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spelling pubmed-75106782020-12-22 Chloroplast genome and phylogenetic analyses of Poncirus trifoliata (Rutaceae) He, Shui-Lian Tian, Yang Yang, Yang Shi, Chong-Ying Mitochondrial DNA B Resour Mitogenome Announcements Poncirus trifoliata is an important medicinal plant that is used to treat human diseases. In this study, the complete chloroplast (cp) genome of P. trifoliata was assembled based on the Illumina sequencing reads. The cp genome of P. trifoliata was 160,260 bp and contained two short inverted repeat regions (27,029 bp) which were separated by a small single copy region (18,760 bp) and a large single copy region (87,442 bp). The cp genome encodes 113 unique genes, including 79 protein-coding genes, 30 transfer RNA genes and 4 ribosomal RNA genes. The topology of the phylogenetic tree showed that P. trifoliata is closely clustered with genus Citrus. Taylor & Francis 2020-06-01 /pmc/articles/PMC7510678/ /pubmed/33366973 http://dx.doi.org/10.1080/23802359.2019.1687023 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcements
He, Shui-Lian
Tian, Yang
Yang, Yang
Shi, Chong-Ying
Chloroplast genome and phylogenetic analyses of Poncirus trifoliata (Rutaceae)
title Chloroplast genome and phylogenetic analyses of Poncirus trifoliata (Rutaceae)
title_full Chloroplast genome and phylogenetic analyses of Poncirus trifoliata (Rutaceae)
title_fullStr Chloroplast genome and phylogenetic analyses of Poncirus trifoliata (Rutaceae)
title_full_unstemmed Chloroplast genome and phylogenetic analyses of Poncirus trifoliata (Rutaceae)
title_short Chloroplast genome and phylogenetic analyses of Poncirus trifoliata (Rutaceae)
title_sort chloroplast genome and phylogenetic analyses of poncirus trifoliata (rutaceae)
topic Mitogenome Announcements
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510678/
https://www.ncbi.nlm.nih.gov/pubmed/33366973
http://dx.doi.org/10.1080/23802359.2019.1687023
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