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Characterization of the complete chloroplast genome sequence of Pistia stratiotes (Araceae) and its phylogenetic implications
Pistia stratiotes is an invasive aquatic weed in South China. In this study, the first complete chloroplast (cp) genome of P. stratiotes was reported and phylogenetic analysis was conducted with Araceae species based on the cp genome sequences. The genome is a circular molecule of 164,551 bp in leng...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510755/ https://www.ncbi.nlm.nih.gov/pubmed/33366955 http://dx.doi.org/10.1080/23802359.2020.1768935 |
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author | Quan, Guoming Chen, Lushu |
author_facet | Quan, Guoming Chen, Lushu |
author_sort | Quan, Guoming |
collection | PubMed |
description | Pistia stratiotes is an invasive aquatic weed in South China. In this study, the first complete chloroplast (cp) genome of P. stratiotes was reported and phylogenetic analysis was conducted with Araceae species based on the cp genome sequences. The genome is a circular molecule of 164,551 bp in length with 36.00% average GC content and includes a large single-copy region (90,705 bp), a small single-copy region (21,886 bp), and two inverted repeat regions (25,980 bp). It contains a total of 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The maximum likelihood tree indicated that P. stratiotes is related to the genus of Alocasia. The cp genome will provide useful molecular data for further phylogenetic and evolutionary analysis of P. stratiotes. |
format | Online Article Text |
id | pubmed-7510755 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-75107552020-12-22 Characterization of the complete chloroplast genome sequence of Pistia stratiotes (Araceae) and its phylogenetic implications Quan, Guoming Chen, Lushu Mitochondrial DNA B Resour Mitogenome Announcement Pistia stratiotes is an invasive aquatic weed in South China. In this study, the first complete chloroplast (cp) genome of P. stratiotes was reported and phylogenetic analysis was conducted with Araceae species based on the cp genome sequences. The genome is a circular molecule of 164,551 bp in length with 36.00% average GC content and includes a large single-copy region (90,705 bp), a small single-copy region (21,886 bp), and two inverted repeat regions (25,980 bp). It contains a total of 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The maximum likelihood tree indicated that P. stratiotes is related to the genus of Alocasia. The cp genome will provide useful molecular data for further phylogenetic and evolutionary analysis of P. stratiotes. Taylor & Francis 2020-05-27 /pmc/articles/PMC7510755/ /pubmed/33366955 http://dx.doi.org/10.1080/23802359.2020.1768935 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Quan, Guoming Chen, Lushu Characterization of the complete chloroplast genome sequence of Pistia stratiotes (Araceae) and its phylogenetic implications |
title | Characterization of the complete chloroplast genome sequence of Pistia stratiotes (Araceae) and its phylogenetic implications |
title_full | Characterization of the complete chloroplast genome sequence of Pistia stratiotes (Araceae) and its phylogenetic implications |
title_fullStr | Characterization of the complete chloroplast genome sequence of Pistia stratiotes (Araceae) and its phylogenetic implications |
title_full_unstemmed | Characterization of the complete chloroplast genome sequence of Pistia stratiotes (Araceae) and its phylogenetic implications |
title_short | Characterization of the complete chloroplast genome sequence of Pistia stratiotes (Araceae) and its phylogenetic implications |
title_sort | characterization of the complete chloroplast genome sequence of pistia stratiotes (araceae) and its phylogenetic implications |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510755/ https://www.ncbi.nlm.nih.gov/pubmed/33366955 http://dx.doi.org/10.1080/23802359.2020.1768935 |
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