The complete chloroplast genome sequence of Malus sieboldii (Rosaceae) and its phylogenetic analysis

Malus sieboldii belongs to the genus Malus (Rosaceae) and is commonly considered a good rootstock for apple trees. The chloroplast (cp) genome of M. sieboldii was assembled using Illumina HiSeq sequencing. The whole cp genome is 160,168 bp in size, with a typical quadripartite structure consisting o...

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Detalles Bibliográficos
Autores principales: Lou, Gongli, Wang, Shuai, Zhang, Bin, Cheng, Yueqin, Wang, Hongwei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510758/
https://www.ncbi.nlm.nih.gov/pubmed/33366956
http://dx.doi.org/10.1080/23802359.2020.1768940
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author Lou, Gongli
Wang, Shuai
Zhang, Bin
Cheng, Yueqin
Wang, Hongwei
author_facet Lou, Gongli
Wang, Shuai
Zhang, Bin
Cheng, Yueqin
Wang, Hongwei
author_sort Lou, Gongli
collection PubMed
description Malus sieboldii belongs to the genus Malus (Rosaceae) and is commonly considered a good rootstock for apple trees. The chloroplast (cp) genome of M. sieboldii was assembled using Illumina HiSeq sequencing. The whole cp genome is 160,168 bp in size, with a typical quadripartite structure consisting of a pair of inverted repeats (IR 52,716 bp), a large single-copy region (LSC 88,267 bp), and a small single-copy region (SSC 19,185 bp). The plastid genome contains 129 genes, 84 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Bayesian phylogenetic analysis showed that M. sieboldii is most closely related to M. hupehensis. The cp genome will provide more information about the taxonomy and cp evolution of the genus Malus.
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spelling pubmed-75107582020-12-22 The complete chloroplast genome sequence of Malus sieboldii (Rosaceae) and its phylogenetic analysis Lou, Gongli Wang, Shuai Zhang, Bin Cheng, Yueqin Wang, Hongwei Mitochondrial DNA B Resour Mitogenome Announcement Malus sieboldii belongs to the genus Malus (Rosaceae) and is commonly considered a good rootstock for apple trees. The chloroplast (cp) genome of M. sieboldii was assembled using Illumina HiSeq sequencing. The whole cp genome is 160,168 bp in size, with a typical quadripartite structure consisting of a pair of inverted repeats (IR 52,716 bp), a large single-copy region (LSC 88,267 bp), and a small single-copy region (SSC 19,185 bp). The plastid genome contains 129 genes, 84 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Bayesian phylogenetic analysis showed that M. sieboldii is most closely related to M. hupehensis. The cp genome will provide more information about the taxonomy and cp evolution of the genus Malus. Taylor & Francis 2020-05-27 /pmc/articles/PMC7510758/ /pubmed/33366956 http://dx.doi.org/10.1080/23802359.2020.1768940 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Lou, Gongli
Wang, Shuai
Zhang, Bin
Cheng, Yueqin
Wang, Hongwei
The complete chloroplast genome sequence of Malus sieboldii (Rosaceae) and its phylogenetic analysis
title The complete chloroplast genome sequence of Malus sieboldii (Rosaceae) and its phylogenetic analysis
title_full The complete chloroplast genome sequence of Malus sieboldii (Rosaceae) and its phylogenetic analysis
title_fullStr The complete chloroplast genome sequence of Malus sieboldii (Rosaceae) and its phylogenetic analysis
title_full_unstemmed The complete chloroplast genome sequence of Malus sieboldii (Rosaceae) and its phylogenetic analysis
title_short The complete chloroplast genome sequence of Malus sieboldii (Rosaceae) and its phylogenetic analysis
title_sort complete chloroplast genome sequence of malus sieboldii (rosaceae) and its phylogenetic analysis
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510758/
https://www.ncbi.nlm.nih.gov/pubmed/33366956
http://dx.doi.org/10.1080/23802359.2020.1768940
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