Characterization of the chloroplast genome of Calanthe henryi (Epidendroideae; Orchidaceae)

The first complete chloroplast (cp) genome sequences of an endemic and endangered species in China, Calanthe henryi, were reported in this study. The cp genome of C. henryi was 158,256 bp long, with two inverted repeat (IR) regions of 26,348 bp, a large single copy (LSC) region of 87,137 bp, and a s...

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Autores principales: Zhang, Shu-Dong, Wang, Qin, Du, Mao-Mao, Ling, Li-Zhen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510761/
https://www.ncbi.nlm.nih.gov/pubmed/33367005
http://dx.doi.org/10.1080/23802359.2020.1770141
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author Zhang, Shu-Dong
Wang, Qin
Du, Mao-Mao
Ling, Li-Zhen
author_facet Zhang, Shu-Dong
Wang, Qin
Du, Mao-Mao
Ling, Li-Zhen
author_sort Zhang, Shu-Dong
collection PubMed
description The first complete chloroplast (cp) genome sequences of an endemic and endangered species in China, Calanthe henryi, were reported in this study. The cp genome of C. henryi was 158,256 bp long, with two inverted repeat (IR) regions of 26,348 bp, a large single copy (LSC) region of 87,137 bp, and a small single copy (SSC) region of 18,423 bp. The cp genome of this species contained 113 genes, including 79 protein-coding genes, 4 ribosomal RNA genes, and 30 transfer RNA genes. The overall GC content was 36.7%. Phylogenetic analysis of 60 cp genomes within the subfamily of Epidendroideae suggests that C. henryi is closely related to C. bicolor.
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spelling pubmed-75107612020-12-22 Characterization of the chloroplast genome of Calanthe henryi (Epidendroideae; Orchidaceae) Zhang, Shu-Dong Wang, Qin Du, Mao-Mao Ling, Li-Zhen Mitochondrial DNA B Resour Mitogenome Announcement The first complete chloroplast (cp) genome sequences of an endemic and endangered species in China, Calanthe henryi, were reported in this study. The cp genome of C. henryi was 158,256 bp long, with two inverted repeat (IR) regions of 26,348 bp, a large single copy (LSC) region of 87,137 bp, and a small single copy (SSC) region of 18,423 bp. The cp genome of this species contained 113 genes, including 79 protein-coding genes, 4 ribosomal RNA genes, and 30 transfer RNA genes. The overall GC content was 36.7%. Phylogenetic analysis of 60 cp genomes within the subfamily of Epidendroideae suggests that C. henryi is closely related to C. bicolor. Taylor & Francis 2020-06-02 /pmc/articles/PMC7510761/ /pubmed/33367005 http://dx.doi.org/10.1080/23802359.2020.1770141 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Zhang, Shu-Dong
Wang, Qin
Du, Mao-Mao
Ling, Li-Zhen
Characterization of the chloroplast genome of Calanthe henryi (Epidendroideae; Orchidaceae)
title Characterization of the chloroplast genome of Calanthe henryi (Epidendroideae; Orchidaceae)
title_full Characterization of the chloroplast genome of Calanthe henryi (Epidendroideae; Orchidaceae)
title_fullStr Characterization of the chloroplast genome of Calanthe henryi (Epidendroideae; Orchidaceae)
title_full_unstemmed Characterization of the chloroplast genome of Calanthe henryi (Epidendroideae; Orchidaceae)
title_short Characterization of the chloroplast genome of Calanthe henryi (Epidendroideae; Orchidaceae)
title_sort characterization of the chloroplast genome of calanthe henryi (epidendroideae; orchidaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510761/
https://www.ncbi.nlm.nih.gov/pubmed/33367005
http://dx.doi.org/10.1080/23802359.2020.1770141
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