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Characterization of the complete chloroplast genome of Xanthium sibiricum, one of the traditional Chinese medicines in China
Xanthium sibiricum is a common and annual the Traditional Chinese Medicine for many years in China. In this study, we presented the complete chloroplast genome of X. sibiricum. The chloroplast genome size was 151,897 bp in length that contained a large single-copy region (LSC) of 83,847 bp, a small...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510823/ https://www.ncbi.nlm.nih.gov/pubmed/33366912 http://dx.doi.org/10.1080/23802359.2020.1731368 |
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author | Lv, Jing Zhu, Shibing Liu, Shan |
author_facet | Lv, Jing Zhu, Shibing Liu, Shan |
author_sort | Lv, Jing |
collection | PubMed |
description | Xanthium sibiricum is a common and annual the Traditional Chinese Medicine for many years in China. In this study, we presented the complete chloroplast genome of X. sibiricum. The chloroplast genome size was 151,897 bp in length that contained a large single-copy region (LSC) of 83,847 bp, a small single-copy region (SSC) of 17,890 bp and two inverted repeat regions (IR) of 25,080 bp. The overall nucleotide composition of the chloroplast genome is: 31.2% of A, 31.3% T, 18.5% C and 19.0% G, with a total G + C content of the chloroplast genome 37.5% and A + T of 62.5%. The chloroplast genome of X. sibiricum contains 133 genes, which included 88 protein-coding genes (PCG), 37 transfer RNA (tRNAs), and 8 ribosome RNA (rRNAs). Phylogenetic neighbour-joining (NJ) analysis result shown that the position of X. sibiricum closely related to X. strumarium in evolutionary relationship. |
format | Online Article Text |
id | pubmed-7510823 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-75108232020-12-22 Characterization of the complete chloroplast genome of Xanthium sibiricum, one of the traditional Chinese medicines in China Lv, Jing Zhu, Shibing Liu, Shan Mitochondrial DNA B Resour Mitogenome Announcement Xanthium sibiricum is a common and annual the Traditional Chinese Medicine for many years in China. In this study, we presented the complete chloroplast genome of X. sibiricum. The chloroplast genome size was 151,897 bp in length that contained a large single-copy region (LSC) of 83,847 bp, a small single-copy region (SSC) of 17,890 bp and two inverted repeat regions (IR) of 25,080 bp. The overall nucleotide composition of the chloroplast genome is: 31.2% of A, 31.3% T, 18.5% C and 19.0% G, with a total G + C content of the chloroplast genome 37.5% and A + T of 62.5%. The chloroplast genome of X. sibiricum contains 133 genes, which included 88 protein-coding genes (PCG), 37 transfer RNA (tRNAs), and 8 ribosome RNA (rRNAs). Phylogenetic neighbour-joining (NJ) analysis result shown that the position of X. sibiricum closely related to X. strumarium in evolutionary relationship. Taylor & Francis 2020-02-28 /pmc/articles/PMC7510823/ /pubmed/33366912 http://dx.doi.org/10.1080/23802359.2020.1731368 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Lv, Jing Zhu, Shibing Liu, Shan Characterization of the complete chloroplast genome of Xanthium sibiricum, one of the traditional Chinese medicines in China |
title | Characterization of the complete chloroplast genome of Xanthium sibiricum, one of the traditional Chinese medicines in China |
title_full | Characterization of the complete chloroplast genome of Xanthium sibiricum, one of the traditional Chinese medicines in China |
title_fullStr | Characterization of the complete chloroplast genome of Xanthium sibiricum, one of the traditional Chinese medicines in China |
title_full_unstemmed | Characterization of the complete chloroplast genome of Xanthium sibiricum, one of the traditional Chinese medicines in China |
title_short | Characterization of the complete chloroplast genome of Xanthium sibiricum, one of the traditional Chinese medicines in China |
title_sort | characterization of the complete chloroplast genome of xanthium sibiricum, one of the traditional chinese medicines in china |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510823/ https://www.ncbi.nlm.nih.gov/pubmed/33366912 http://dx.doi.org/10.1080/23802359.2020.1731368 |
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