Characterization and phylogenetic analysis of the complete chloroplast genome sequence of Disanthus cercidifolius subsp. longipes (Hamamelidaceae), a rare and endangered wild plant species in China

Disanthus cercidifolius subsp. longipes is a rare and endangered plant species. In our study, the complete chloroplast genome was assembled by using high-throughput DNA sequencing data. The whole CP genome is 158,076 bp in length, comprising of a large single-copy region of 87,148 bp, a small single...

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Detalles Bibliográficos
Autores principales: Jiang, Ming, Wang, Junfeng, Zhang, Huijuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510833/
https://www.ncbi.nlm.nih.gov/pubmed/33366914
http://dx.doi.org/10.1080/23802359.2020.1731372
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author Jiang, Ming
Wang, Junfeng
Zhang, Huijuan
author_facet Jiang, Ming
Wang, Junfeng
Zhang, Huijuan
author_sort Jiang, Ming
collection PubMed
description Disanthus cercidifolius subsp. longipes is a rare and endangered plant species. In our study, the complete chloroplast genome was assembled by using high-throughput DNA sequencing data. The whole CP genome is 158,076 bp in length, comprising of a large single-copy region of 87,148 bp, a small single-copy region of 18,300 bp, and two inverted repeat regions of 26,314 bp each. There are 136 genes in the genome, including 86 protein-coding genes, 40 transfer RNA genes, eight ribosomal RNA genes, and two pseudogenes (ndhK and ycf1). Phylogenetic results demonstrated that D. cercidifolius subsp. longipes grouped with other Hamamelidaceae species, with a support rate of 100%.
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spelling pubmed-75108332020-12-22 Characterization and phylogenetic analysis of the complete chloroplast genome sequence of Disanthus cercidifolius subsp. longipes (Hamamelidaceae), a rare and endangered wild plant species in China Jiang, Ming Wang, Junfeng Zhang, Huijuan Mitochondrial DNA B Resour Mitogenome Announcement Disanthus cercidifolius subsp. longipes is a rare and endangered plant species. In our study, the complete chloroplast genome was assembled by using high-throughput DNA sequencing data. The whole CP genome is 158,076 bp in length, comprising of a large single-copy region of 87,148 bp, a small single-copy region of 18,300 bp, and two inverted repeat regions of 26,314 bp each. There are 136 genes in the genome, including 86 protein-coding genes, 40 transfer RNA genes, eight ribosomal RNA genes, and two pseudogenes (ndhK and ycf1). Phylogenetic results demonstrated that D. cercidifolius subsp. longipes grouped with other Hamamelidaceae species, with a support rate of 100%. Taylor & Francis 2020-02-28 /pmc/articles/PMC7510833/ /pubmed/33366914 http://dx.doi.org/10.1080/23802359.2020.1731372 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Jiang, Ming
Wang, Junfeng
Zhang, Huijuan
Characterization and phylogenetic analysis of the complete chloroplast genome sequence of Disanthus cercidifolius subsp. longipes (Hamamelidaceae), a rare and endangered wild plant species in China
title Characterization and phylogenetic analysis of the complete chloroplast genome sequence of Disanthus cercidifolius subsp. longipes (Hamamelidaceae), a rare and endangered wild plant species in China
title_full Characterization and phylogenetic analysis of the complete chloroplast genome sequence of Disanthus cercidifolius subsp. longipes (Hamamelidaceae), a rare and endangered wild plant species in China
title_fullStr Characterization and phylogenetic analysis of the complete chloroplast genome sequence of Disanthus cercidifolius subsp. longipes (Hamamelidaceae), a rare and endangered wild plant species in China
title_full_unstemmed Characterization and phylogenetic analysis of the complete chloroplast genome sequence of Disanthus cercidifolius subsp. longipes (Hamamelidaceae), a rare and endangered wild plant species in China
title_short Characterization and phylogenetic analysis of the complete chloroplast genome sequence of Disanthus cercidifolius subsp. longipes (Hamamelidaceae), a rare and endangered wild plant species in China
title_sort characterization and phylogenetic analysis of the complete chloroplast genome sequence of disanthus cercidifolius subsp. longipes (hamamelidaceae), a rare and endangered wild plant species in china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510833/
https://www.ncbi.nlm.nih.gov/pubmed/33366914
http://dx.doi.org/10.1080/23802359.2020.1731372
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