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Viral RNA Genomes Identified from Marine Macroalgae and a Diatom

Protists provide insights into the diversity and function of RNA viruses in marine systems. Among them, marine macroalgae are good targets for RNA virome analyses because they have a sufficient biomass in nature. However, RNA viruses in macroalgae have not yet been examined in detail, and only parti...

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Detalles Bibliográficos
Autores principales: Chiba, Yuto, Tomaru, Yuji, Shimabukuro, Hiromori, Kimura, Kei, Hirai, Miho, Takaki, Yoshihiro, Hagiwara, Daisuke, Nunoura, Takuro, Urayama, Syun-ichi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Japanese Society of Microbial Ecology / Japanese Society of Soil Microbiology / Taiwan Society of Microbial Ecology / Japanese Society of Plant Microbe Interactions / Japanese Society for Extremophiles 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7511793/
https://www.ncbi.nlm.nih.gov/pubmed/32554943
http://dx.doi.org/10.1264/jsme2.ME20016
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author Chiba, Yuto
Tomaru, Yuji
Shimabukuro, Hiromori
Kimura, Kei
Hirai, Miho
Takaki, Yoshihiro
Hagiwara, Daisuke
Nunoura, Takuro
Urayama, Syun-ichi
author_facet Chiba, Yuto
Tomaru, Yuji
Shimabukuro, Hiromori
Kimura, Kei
Hirai, Miho
Takaki, Yoshihiro
Hagiwara, Daisuke
Nunoura, Takuro
Urayama, Syun-ichi
author_sort Chiba, Yuto
collection PubMed
description Protists provide insights into the diversity and function of RNA viruses in marine systems. Among them, marine macroalgae are good targets for RNA virome analyses because they have a sufficient biomass in nature. However, RNA viruses in macroalgae have not yet been examined in detail, and only partial genome sequences have been reported for the majority of RNA viruses. Therefore, to obtain further insights into the distribution and diversity of RNA viruses associated with marine protists, we herein examined RNA viruses in macroalgae and a diatom. We report the putative complete genome sequences of six novel RNA viruses from two marine macroalgae and one diatom holobiont. Four viruses were not classified into established viral genera or families. Furthermore, a virus classified into Totiviridae showed a genome structure that has not yet been reported in this family. These results suggest that a number of distinct RNA viruses are widespread in a broad range of protists.
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spelling pubmed-75117932020-11-18 Viral RNA Genomes Identified from Marine Macroalgae and a Diatom Chiba, Yuto Tomaru, Yuji Shimabukuro, Hiromori Kimura, Kei Hirai, Miho Takaki, Yoshihiro Hagiwara, Daisuke Nunoura, Takuro Urayama, Syun-ichi Microbes Environ Regular Paper Protists provide insights into the diversity and function of RNA viruses in marine systems. Among them, marine macroalgae are good targets for RNA virome analyses because they have a sufficient biomass in nature. However, RNA viruses in macroalgae have not yet been examined in detail, and only partial genome sequences have been reported for the majority of RNA viruses. Therefore, to obtain further insights into the distribution and diversity of RNA viruses associated with marine protists, we herein examined RNA viruses in macroalgae and a diatom. We report the putative complete genome sequences of six novel RNA viruses from two marine macroalgae and one diatom holobiont. Four viruses were not classified into established viral genera or families. Furthermore, a virus classified into Totiviridae showed a genome structure that has not yet been reported in this family. These results suggest that a number of distinct RNA viruses are widespread in a broad range of protists. Japanese Society of Microbial Ecology / Japanese Society of Soil Microbiology / Taiwan Society of Microbial Ecology / Japanese Society of Plant Microbe Interactions / Japanese Society for Extremophiles 2020 2020-06-17 /pmc/articles/PMC7511793/ /pubmed/32554943 http://dx.doi.org/10.1264/jsme2.ME20016 Text en 2020 by Japanese Society of Microbial Ecology / Japanese Society of Soil Microbiology / Taiwan Society of Microbial Ecology / Japanese Society of Plant Microbe Interactions / Japanese Society for Extremophiles. http://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Regular Paper
Chiba, Yuto
Tomaru, Yuji
Shimabukuro, Hiromori
Kimura, Kei
Hirai, Miho
Takaki, Yoshihiro
Hagiwara, Daisuke
Nunoura, Takuro
Urayama, Syun-ichi
Viral RNA Genomes Identified from Marine Macroalgae and a Diatom
title Viral RNA Genomes Identified from Marine Macroalgae and a Diatom
title_full Viral RNA Genomes Identified from Marine Macroalgae and a Diatom
title_fullStr Viral RNA Genomes Identified from Marine Macroalgae and a Diatom
title_full_unstemmed Viral RNA Genomes Identified from Marine Macroalgae and a Diatom
title_short Viral RNA Genomes Identified from Marine Macroalgae and a Diatom
title_sort viral rna genomes identified from marine macroalgae and a diatom
topic Regular Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7511793/
https://www.ncbi.nlm.nih.gov/pubmed/32554943
http://dx.doi.org/10.1264/jsme2.ME20016
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