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Polynomial-Time Algorithm for Learning Optimal BFS-Consistent Dynamic Bayesian Networks

Dynamic Bayesian networks (DBN) are powerful probabilistic representations that model stochastic processes. They consist of a prior network, representing the distribution over the initial variables, and a set of transition networks, representing the transition distribution between variables over tim...

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Autores principales: Sousa, Margarida, Carvalho, Alexandra M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7512791/
https://www.ncbi.nlm.nih.gov/pubmed/33265365
http://dx.doi.org/10.3390/e20040274
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author Sousa, Margarida
Carvalho, Alexandra M.
author_facet Sousa, Margarida
Carvalho, Alexandra M.
author_sort Sousa, Margarida
collection PubMed
description Dynamic Bayesian networks (DBN) are powerful probabilistic representations that model stochastic processes. They consist of a prior network, representing the distribution over the initial variables, and a set of transition networks, representing the transition distribution between variables over time. It was shown that learning complex transition networks, considering both intra- and inter-slice connections, is NP-hard. Therefore, the community has searched for the largest subclass of DBNs for which there is an efficient learning algorithm. We introduce a new polynomial-time algorithm for learning optimal DBNs consistent with a breadth-first search (BFS) order, named bcDBN. The proposed algorithm considers the set of networks such that each transition network has a bounded in-degree, allowing for p edges from past time slices (inter-slice connections) and k edges from the current time slice (intra-slice connections) consistent with the BFS order induced by the optimal tree-augmented network (tDBN). This approach increases exponentially, in the number of variables, the search space of the state-of-the-art tDBN algorithm. Concerning worst-case time complexity, given a Markov lag m, a set of n random variables ranging over r values, and a set of observations of N individuals over T time steps, the bcDBN algorithm is linear in N, T and m; polynomial in n and r; and exponential in p and k. We assess the bcDBN algorithm on simulated data against tDBN, revealing that it performs well throughout different experiments.
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spelling pubmed-75127912020-11-09 Polynomial-Time Algorithm for Learning Optimal BFS-Consistent Dynamic Bayesian Networks Sousa, Margarida Carvalho, Alexandra M. Entropy (Basel) Article Dynamic Bayesian networks (DBN) are powerful probabilistic representations that model stochastic processes. They consist of a prior network, representing the distribution over the initial variables, and a set of transition networks, representing the transition distribution between variables over time. It was shown that learning complex transition networks, considering both intra- and inter-slice connections, is NP-hard. Therefore, the community has searched for the largest subclass of DBNs for which there is an efficient learning algorithm. We introduce a new polynomial-time algorithm for learning optimal DBNs consistent with a breadth-first search (BFS) order, named bcDBN. The proposed algorithm considers the set of networks such that each transition network has a bounded in-degree, allowing for p edges from past time slices (inter-slice connections) and k edges from the current time slice (intra-slice connections) consistent with the BFS order induced by the optimal tree-augmented network (tDBN). This approach increases exponentially, in the number of variables, the search space of the state-of-the-art tDBN algorithm. Concerning worst-case time complexity, given a Markov lag m, a set of n random variables ranging over r values, and a set of observations of N individuals over T time steps, the bcDBN algorithm is linear in N, T and m; polynomial in n and r; and exponential in p and k. We assess the bcDBN algorithm on simulated data against tDBN, revealing that it performs well throughout different experiments. MDPI 2018-04-12 /pmc/articles/PMC7512791/ /pubmed/33265365 http://dx.doi.org/10.3390/e20040274 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Sousa, Margarida
Carvalho, Alexandra M.
Polynomial-Time Algorithm for Learning Optimal BFS-Consistent Dynamic Bayesian Networks
title Polynomial-Time Algorithm for Learning Optimal BFS-Consistent Dynamic Bayesian Networks
title_full Polynomial-Time Algorithm for Learning Optimal BFS-Consistent Dynamic Bayesian Networks
title_fullStr Polynomial-Time Algorithm for Learning Optimal BFS-Consistent Dynamic Bayesian Networks
title_full_unstemmed Polynomial-Time Algorithm for Learning Optimal BFS-Consistent Dynamic Bayesian Networks
title_short Polynomial-Time Algorithm for Learning Optimal BFS-Consistent Dynamic Bayesian Networks
title_sort polynomial-time algorithm for learning optimal bfs-consistent dynamic bayesian networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7512791/
https://www.ncbi.nlm.nih.gov/pubmed/33265365
http://dx.doi.org/10.3390/e20040274
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