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Polynomial-Time Algorithm for Learning Optimal BFS-Consistent Dynamic Bayesian Networks
Dynamic Bayesian networks (DBN) are powerful probabilistic representations that model stochastic processes. They consist of a prior network, representing the distribution over the initial variables, and a set of transition networks, representing the transition distribution between variables over tim...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7512791/ https://www.ncbi.nlm.nih.gov/pubmed/33265365 http://dx.doi.org/10.3390/e20040274 |
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author | Sousa, Margarida Carvalho, Alexandra M. |
author_facet | Sousa, Margarida Carvalho, Alexandra M. |
author_sort | Sousa, Margarida |
collection | PubMed |
description | Dynamic Bayesian networks (DBN) are powerful probabilistic representations that model stochastic processes. They consist of a prior network, representing the distribution over the initial variables, and a set of transition networks, representing the transition distribution between variables over time. It was shown that learning complex transition networks, considering both intra- and inter-slice connections, is NP-hard. Therefore, the community has searched for the largest subclass of DBNs for which there is an efficient learning algorithm. We introduce a new polynomial-time algorithm for learning optimal DBNs consistent with a breadth-first search (BFS) order, named bcDBN. The proposed algorithm considers the set of networks such that each transition network has a bounded in-degree, allowing for p edges from past time slices (inter-slice connections) and k edges from the current time slice (intra-slice connections) consistent with the BFS order induced by the optimal tree-augmented network (tDBN). This approach increases exponentially, in the number of variables, the search space of the state-of-the-art tDBN algorithm. Concerning worst-case time complexity, given a Markov lag m, a set of n random variables ranging over r values, and a set of observations of N individuals over T time steps, the bcDBN algorithm is linear in N, T and m; polynomial in n and r; and exponential in p and k. We assess the bcDBN algorithm on simulated data against tDBN, revealing that it performs well throughout different experiments. |
format | Online Article Text |
id | pubmed-7512791 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-75127912020-11-09 Polynomial-Time Algorithm for Learning Optimal BFS-Consistent Dynamic Bayesian Networks Sousa, Margarida Carvalho, Alexandra M. Entropy (Basel) Article Dynamic Bayesian networks (DBN) are powerful probabilistic representations that model stochastic processes. They consist of a prior network, representing the distribution over the initial variables, and a set of transition networks, representing the transition distribution between variables over time. It was shown that learning complex transition networks, considering both intra- and inter-slice connections, is NP-hard. Therefore, the community has searched for the largest subclass of DBNs for which there is an efficient learning algorithm. We introduce a new polynomial-time algorithm for learning optimal DBNs consistent with a breadth-first search (BFS) order, named bcDBN. The proposed algorithm considers the set of networks such that each transition network has a bounded in-degree, allowing for p edges from past time slices (inter-slice connections) and k edges from the current time slice (intra-slice connections) consistent with the BFS order induced by the optimal tree-augmented network (tDBN). This approach increases exponentially, in the number of variables, the search space of the state-of-the-art tDBN algorithm. Concerning worst-case time complexity, given a Markov lag m, a set of n random variables ranging over r values, and a set of observations of N individuals over T time steps, the bcDBN algorithm is linear in N, T and m; polynomial in n and r; and exponential in p and k. We assess the bcDBN algorithm on simulated data against tDBN, revealing that it performs well throughout different experiments. MDPI 2018-04-12 /pmc/articles/PMC7512791/ /pubmed/33265365 http://dx.doi.org/10.3390/e20040274 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Sousa, Margarida Carvalho, Alexandra M. Polynomial-Time Algorithm for Learning Optimal BFS-Consistent Dynamic Bayesian Networks |
title | Polynomial-Time Algorithm for Learning Optimal BFS-Consistent Dynamic Bayesian Networks |
title_full | Polynomial-Time Algorithm for Learning Optimal BFS-Consistent Dynamic Bayesian Networks |
title_fullStr | Polynomial-Time Algorithm for Learning Optimal BFS-Consistent Dynamic Bayesian Networks |
title_full_unstemmed | Polynomial-Time Algorithm for Learning Optimal BFS-Consistent Dynamic Bayesian Networks |
title_short | Polynomial-Time Algorithm for Learning Optimal BFS-Consistent Dynamic Bayesian Networks |
title_sort | polynomial-time algorithm for learning optimal bfs-consistent dynamic bayesian networks |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7512791/ https://www.ncbi.nlm.nih.gov/pubmed/33265365 http://dx.doi.org/10.3390/e20040274 |
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