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Intrinsic Computation of a Monod-Wyman-Changeux Molecule
Causal states are minimal sufficient statistics of prediction of a stochastic process, their coding cost is called statistical complexity, and the implied causal structure yields a sense of the process’ “intrinsic computation”. We discuss how statistical complexity changes with slight changes to the...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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MDPI
2018
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7513124/ https://www.ncbi.nlm.nih.gov/pubmed/33265688 http://dx.doi.org/10.3390/e20080599 |
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author | Marzen, Sarah |
author_facet | Marzen, Sarah |
author_sort | Marzen, Sarah |
collection | PubMed |
description | Causal states are minimal sufficient statistics of prediction of a stochastic process, their coding cost is called statistical complexity, and the implied causal structure yields a sense of the process’ “intrinsic computation”. We discuss how statistical complexity changes with slight changes to the underlying model– in this case, a biologically-motivated dynamical model, that of a Monod-Wyman-Changeux molecule. Perturbations to kinetic rates cause statistical complexity to jump from finite to infinite. The same is not true for excess entropy, the mutual information between past and future, or for the molecule’s transfer function. We discuss the implications of this for the relationship between intrinsic and functional computation of biological sensory systems. |
format | Online Article Text |
id | pubmed-7513124 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-75131242020-11-09 Intrinsic Computation of a Monod-Wyman-Changeux Molecule Marzen, Sarah Entropy (Basel) Article Causal states are minimal sufficient statistics of prediction of a stochastic process, their coding cost is called statistical complexity, and the implied causal structure yields a sense of the process’ “intrinsic computation”. We discuss how statistical complexity changes with slight changes to the underlying model– in this case, a biologically-motivated dynamical model, that of a Monod-Wyman-Changeux molecule. Perturbations to kinetic rates cause statistical complexity to jump from finite to infinite. The same is not true for excess entropy, the mutual information between past and future, or for the molecule’s transfer function. We discuss the implications of this for the relationship between intrinsic and functional computation of biological sensory systems. MDPI 2018-08-11 /pmc/articles/PMC7513124/ /pubmed/33265688 http://dx.doi.org/10.3390/e20080599 Text en © 2018 by the author. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Marzen, Sarah Intrinsic Computation of a Monod-Wyman-Changeux Molecule |
title | Intrinsic Computation of a Monod-Wyman-Changeux Molecule |
title_full | Intrinsic Computation of a Monod-Wyman-Changeux Molecule |
title_fullStr | Intrinsic Computation of a Monod-Wyman-Changeux Molecule |
title_full_unstemmed | Intrinsic Computation of a Monod-Wyman-Changeux Molecule |
title_short | Intrinsic Computation of a Monod-Wyman-Changeux Molecule |
title_sort | intrinsic computation of a monod-wyman-changeux molecule |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7513124/ https://www.ncbi.nlm.nih.gov/pubmed/33265688 http://dx.doi.org/10.3390/e20080599 |
work_keys_str_mv | AT marzensarah intrinsiccomputationofamonodwymanchangeuxmolecule |