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On Differences between Deterministic and Stochastic Models of Chemical Reactions: Schlögl Solved with ZI-Closure
Deterministic and stochastic models of chemical reaction kinetics can give starkly different results when the deterministic model exhibits more than one stable solution. For example, in the stochastic Schlögl model, the bimodal stationary probability distribution collapses to a unimodal distribution...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7513203/ https://www.ncbi.nlm.nih.gov/pubmed/33265767 http://dx.doi.org/10.3390/e20090678 |
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author | Vlysidis, Michail Kaznessis, Yiannis N. |
author_facet | Vlysidis, Michail Kaznessis, Yiannis N. |
author_sort | Vlysidis, Michail |
collection | PubMed |
description | Deterministic and stochastic models of chemical reaction kinetics can give starkly different results when the deterministic model exhibits more than one stable solution. For example, in the stochastic Schlögl model, the bimodal stationary probability distribution collapses to a unimodal distribution when the system size increases, even for kinetic constant values that result in two distinct stable solutions in the deterministic Schlögl model. Using zero-information (ZI) closure scheme, an algorithm for solving chemical master equations, we compute stationary probability distributions for varying system sizes of the Schlögl model. With ZI-closure, system sizes can be studied that have been previously unattainable by stochastic simulation algorithms. We observe and quantify paradoxical discrepancies between stochastic and deterministic models and explain this behavior by postulating that the entropy of non-equilibrium steady states (NESS) is maximum. |
format | Online Article Text |
id | pubmed-7513203 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-75132032020-11-09 On Differences between Deterministic and Stochastic Models of Chemical Reactions: Schlögl Solved with ZI-Closure Vlysidis, Michail Kaznessis, Yiannis N. Entropy (Basel) Article Deterministic and stochastic models of chemical reaction kinetics can give starkly different results when the deterministic model exhibits more than one stable solution. For example, in the stochastic Schlögl model, the bimodal stationary probability distribution collapses to a unimodal distribution when the system size increases, even for kinetic constant values that result in two distinct stable solutions in the deterministic Schlögl model. Using zero-information (ZI) closure scheme, an algorithm for solving chemical master equations, we compute stationary probability distributions for varying system sizes of the Schlögl model. With ZI-closure, system sizes can be studied that have been previously unattainable by stochastic simulation algorithms. We observe and quantify paradoxical discrepancies between stochastic and deterministic models and explain this behavior by postulating that the entropy of non-equilibrium steady states (NESS) is maximum. MDPI 2018-09-06 /pmc/articles/PMC7513203/ /pubmed/33265767 http://dx.doi.org/10.3390/e20090678 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Vlysidis, Michail Kaznessis, Yiannis N. On Differences between Deterministic and Stochastic Models of Chemical Reactions: Schlögl Solved with ZI-Closure |
title | On Differences between Deterministic and Stochastic Models of Chemical Reactions: Schlögl Solved with ZI-Closure |
title_full | On Differences between Deterministic and Stochastic Models of Chemical Reactions: Schlögl Solved with ZI-Closure |
title_fullStr | On Differences between Deterministic and Stochastic Models of Chemical Reactions: Schlögl Solved with ZI-Closure |
title_full_unstemmed | On Differences between Deterministic and Stochastic Models of Chemical Reactions: Schlögl Solved with ZI-Closure |
title_short | On Differences between Deterministic and Stochastic Models of Chemical Reactions: Schlögl Solved with ZI-Closure |
title_sort | on differences between deterministic and stochastic models of chemical reactions: schlögl solved with zi-closure |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7513203/ https://www.ncbi.nlm.nih.gov/pubmed/33265767 http://dx.doi.org/10.3390/e20090678 |
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