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On Differences between Deterministic and Stochastic Models of Chemical Reactions: Schlögl Solved with ZI-Closure

Deterministic and stochastic models of chemical reaction kinetics can give starkly different results when the deterministic model exhibits more than one stable solution. For example, in the stochastic Schlögl model, the bimodal stationary probability distribution collapses to a unimodal distribution...

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Detalles Bibliográficos
Autores principales: Vlysidis, Michail, Kaznessis, Yiannis N.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7513203/
https://www.ncbi.nlm.nih.gov/pubmed/33265767
http://dx.doi.org/10.3390/e20090678
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author Vlysidis, Michail
Kaznessis, Yiannis N.
author_facet Vlysidis, Michail
Kaznessis, Yiannis N.
author_sort Vlysidis, Michail
collection PubMed
description Deterministic and stochastic models of chemical reaction kinetics can give starkly different results when the deterministic model exhibits more than one stable solution. For example, in the stochastic Schlögl model, the bimodal stationary probability distribution collapses to a unimodal distribution when the system size increases, even for kinetic constant values that result in two distinct stable solutions in the deterministic Schlögl model. Using zero-information (ZI) closure scheme, an algorithm for solving chemical master equations, we compute stationary probability distributions for varying system sizes of the Schlögl model. With ZI-closure, system sizes can be studied that have been previously unattainable by stochastic simulation algorithms. We observe and quantify paradoxical discrepancies between stochastic and deterministic models and explain this behavior by postulating that the entropy of non-equilibrium steady states (NESS) is maximum.
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spelling pubmed-75132032020-11-09 On Differences between Deterministic and Stochastic Models of Chemical Reactions: Schlögl Solved with ZI-Closure Vlysidis, Michail Kaznessis, Yiannis N. Entropy (Basel) Article Deterministic and stochastic models of chemical reaction kinetics can give starkly different results when the deterministic model exhibits more than one stable solution. For example, in the stochastic Schlögl model, the bimodal stationary probability distribution collapses to a unimodal distribution when the system size increases, even for kinetic constant values that result in two distinct stable solutions in the deterministic Schlögl model. Using zero-information (ZI) closure scheme, an algorithm for solving chemical master equations, we compute stationary probability distributions for varying system sizes of the Schlögl model. With ZI-closure, system sizes can be studied that have been previously unattainable by stochastic simulation algorithms. We observe and quantify paradoxical discrepancies between stochastic and deterministic models and explain this behavior by postulating that the entropy of non-equilibrium steady states (NESS) is maximum. MDPI 2018-09-06 /pmc/articles/PMC7513203/ /pubmed/33265767 http://dx.doi.org/10.3390/e20090678 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Vlysidis, Michail
Kaznessis, Yiannis N.
On Differences between Deterministic and Stochastic Models of Chemical Reactions: Schlögl Solved with ZI-Closure
title On Differences between Deterministic and Stochastic Models of Chemical Reactions: Schlögl Solved with ZI-Closure
title_full On Differences between Deterministic and Stochastic Models of Chemical Reactions: Schlögl Solved with ZI-Closure
title_fullStr On Differences between Deterministic and Stochastic Models of Chemical Reactions: Schlögl Solved with ZI-Closure
title_full_unstemmed On Differences between Deterministic and Stochastic Models of Chemical Reactions: Schlögl Solved with ZI-Closure
title_short On Differences between Deterministic and Stochastic Models of Chemical Reactions: Schlögl Solved with ZI-Closure
title_sort on differences between deterministic and stochastic models of chemical reactions: schlögl solved with zi-closure
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7513203/
https://www.ncbi.nlm.nih.gov/pubmed/33265767
http://dx.doi.org/10.3390/e20090678
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