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BioBrick-based ‘Quick Gene Assembly’ in vitro

Because of the technological limitations of de novo DNA synthesis in (i) making constructs containing tandemly repeated DNA sequence units, (ii) making an unbiased DNA library containing DNA fragments with sequence multiplicity in a specific region of target genes, and (iii) replacing DNA fragments,...

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Detalles Bibliográficos
Autores principales: Yamazaki, Ken-ichi, de Mora, Kim, Saitoh, Kensuke
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7513740/
https://www.ncbi.nlm.nih.gov/pubmed/32995504
http://dx.doi.org/10.1093/synbio/ysx003
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author Yamazaki, Ken-ichi
de Mora, Kim
Saitoh, Kensuke
author_facet Yamazaki, Ken-ichi
de Mora, Kim
Saitoh, Kensuke
author_sort Yamazaki, Ken-ichi
collection PubMed
description Because of the technological limitations of de novo DNA synthesis in (i) making constructs containing tandemly repeated DNA sequence units, (ii) making an unbiased DNA library containing DNA fragments with sequence multiplicity in a specific region of target genes, and (iii) replacing DNA fragments, development of efficient and reliable biochemical gene assembly methods is still anticipated. We succeeded in developing a biological standardized genetic parts that are flanked between a common upstream and downstream nucleotide sequences in an appropriate plasmid DNA vector (BioBrick)-based novel assembly method that can be used to assemble genes composed of 25 tandemly repeated BioBricks in the correct format in vitro. We named our new DNA part assembly system: ‘Quick Gene Assembly (QGA)’. The time required for finishing a sequential fusion of five BioBricks is less than 24 h. We believe that the QGA method could be one of the best methods for ‘gene construction based on engineering principles’ at the present time, and is also a method suitable for automation in the near future.
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spelling pubmed-75137402020-09-28 BioBrick-based ‘Quick Gene Assembly’ in vitro Yamazaki, Ken-ichi de Mora, Kim Saitoh, Kensuke Synth Biol (Oxf) Research Article Because of the technological limitations of de novo DNA synthesis in (i) making constructs containing tandemly repeated DNA sequence units, (ii) making an unbiased DNA library containing DNA fragments with sequence multiplicity in a specific region of target genes, and (iii) replacing DNA fragments, development of efficient and reliable biochemical gene assembly methods is still anticipated. We succeeded in developing a biological standardized genetic parts that are flanked between a common upstream and downstream nucleotide sequences in an appropriate plasmid DNA vector (BioBrick)-based novel assembly method that can be used to assemble genes composed of 25 tandemly repeated BioBricks in the correct format in vitro. We named our new DNA part assembly system: ‘Quick Gene Assembly (QGA)’. The time required for finishing a sequential fusion of five BioBricks is less than 24 h. We believe that the QGA method could be one of the best methods for ‘gene construction based on engineering principles’ at the present time, and is also a method suitable for automation in the near future. Oxford University Press 2017-06-14 /pmc/articles/PMC7513740/ /pubmed/32995504 http://dx.doi.org/10.1093/synbio/ysx003 Text en © The Author 2017. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Research Article
Yamazaki, Ken-ichi
de Mora, Kim
Saitoh, Kensuke
BioBrick-based ‘Quick Gene Assembly’ in vitro
title BioBrick-based ‘Quick Gene Assembly’ in vitro
title_full BioBrick-based ‘Quick Gene Assembly’ in vitro
title_fullStr BioBrick-based ‘Quick Gene Assembly’ in vitro
title_full_unstemmed BioBrick-based ‘Quick Gene Assembly’ in vitro
title_short BioBrick-based ‘Quick Gene Assembly’ in vitro
title_sort biobrick-based ‘quick gene assembly’ in vitro
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7513740/
https://www.ncbi.nlm.nih.gov/pubmed/32995504
http://dx.doi.org/10.1093/synbio/ysx003
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