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BioBrick-based ‘Quick Gene Assembly’ in vitro
Because of the technological limitations of de novo DNA synthesis in (i) making constructs containing tandemly repeated DNA sequence units, (ii) making an unbiased DNA library containing DNA fragments with sequence multiplicity in a specific region of target genes, and (iii) replacing DNA fragments,...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7513740/ https://www.ncbi.nlm.nih.gov/pubmed/32995504 http://dx.doi.org/10.1093/synbio/ysx003 |
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author | Yamazaki, Ken-ichi de Mora, Kim Saitoh, Kensuke |
author_facet | Yamazaki, Ken-ichi de Mora, Kim Saitoh, Kensuke |
author_sort | Yamazaki, Ken-ichi |
collection | PubMed |
description | Because of the technological limitations of de novo DNA synthesis in (i) making constructs containing tandemly repeated DNA sequence units, (ii) making an unbiased DNA library containing DNA fragments with sequence multiplicity in a specific region of target genes, and (iii) replacing DNA fragments, development of efficient and reliable biochemical gene assembly methods is still anticipated. We succeeded in developing a biological standardized genetic parts that are flanked between a common upstream and downstream nucleotide sequences in an appropriate plasmid DNA vector (BioBrick)-based novel assembly method that can be used to assemble genes composed of 25 tandemly repeated BioBricks in the correct format in vitro. We named our new DNA part assembly system: ‘Quick Gene Assembly (QGA)’. The time required for finishing a sequential fusion of five BioBricks is less than 24 h. We believe that the QGA method could be one of the best methods for ‘gene construction based on engineering principles’ at the present time, and is also a method suitable for automation in the near future. |
format | Online Article Text |
id | pubmed-7513740 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-75137402020-09-28 BioBrick-based ‘Quick Gene Assembly’ in vitro Yamazaki, Ken-ichi de Mora, Kim Saitoh, Kensuke Synth Biol (Oxf) Research Article Because of the technological limitations of de novo DNA synthesis in (i) making constructs containing tandemly repeated DNA sequence units, (ii) making an unbiased DNA library containing DNA fragments with sequence multiplicity in a specific region of target genes, and (iii) replacing DNA fragments, development of efficient and reliable biochemical gene assembly methods is still anticipated. We succeeded in developing a biological standardized genetic parts that are flanked between a common upstream and downstream nucleotide sequences in an appropriate plasmid DNA vector (BioBrick)-based novel assembly method that can be used to assemble genes composed of 25 tandemly repeated BioBricks in the correct format in vitro. We named our new DNA part assembly system: ‘Quick Gene Assembly (QGA)’. The time required for finishing a sequential fusion of five BioBricks is less than 24 h. We believe that the QGA method could be one of the best methods for ‘gene construction based on engineering principles’ at the present time, and is also a method suitable for automation in the near future. Oxford University Press 2017-06-14 /pmc/articles/PMC7513740/ /pubmed/32995504 http://dx.doi.org/10.1093/synbio/ysx003 Text en © The Author 2017. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Research Article Yamazaki, Ken-ichi de Mora, Kim Saitoh, Kensuke BioBrick-based ‘Quick Gene Assembly’ in vitro |
title | BioBrick-based ‘Quick Gene Assembly’ in vitro |
title_full | BioBrick-based ‘Quick Gene Assembly’ in vitro |
title_fullStr | BioBrick-based ‘Quick Gene Assembly’ in vitro |
title_full_unstemmed | BioBrick-based ‘Quick Gene Assembly’ in vitro |
title_short | BioBrick-based ‘Quick Gene Assembly’ in vitro |
title_sort | biobrick-based ‘quick gene assembly’ in vitro |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7513740/ https://www.ncbi.nlm.nih.gov/pubmed/32995504 http://dx.doi.org/10.1093/synbio/ysx003 |
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