Cargando…

Dissipation in Non-Steady State Regulatory Circuits

In order to respond to environmental signals, cells often use small molecular circuits to transmit information about their surroundings. Recently, motivated by specific examples in signaling and gene regulation, a body of work has focused on the properties of circuits that function out of equilibriu...

Descripción completa

Detalles Bibliográficos
Autores principales: Szymańska-Rożek, Paulina, Villamaina, Dario, Miȩkisz, Jacek, Walczak, Aleksandra M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7514557/
http://dx.doi.org/10.3390/e21121212
_version_ 1783586615400071168
author Szymańska-Rożek, Paulina
Villamaina, Dario
Miȩkisz, Jacek
Walczak, Aleksandra M.
author_facet Szymańska-Rożek, Paulina
Villamaina, Dario
Miȩkisz, Jacek
Walczak, Aleksandra M.
author_sort Szymańska-Rożek, Paulina
collection PubMed
description In order to respond to environmental signals, cells often use small molecular circuits to transmit information about their surroundings. Recently, motivated by specific examples in signaling and gene regulation, a body of work has focused on the properties of circuits that function out of equilibrium and dissipate energy. We briefly review the probabilistic measures of information and dissipation and use simple models to discuss and illustrate trade-offs between information and dissipation in biological circuits. We find that circuits with non-steady state initial conditions can transmit more information at small readout delays than steady state circuits. The dissipative cost of this additional information proves marginal compared to the steady state dissipation. Feedback does not significantly increase the transmitted information for out of steady state circuits but does decrease dissipative costs. Lastly, we discuss the case of bursty gene regulatory circuits that, even in the fast switching limit, function out of equilibrium.
format Online
Article
Text
id pubmed-7514557
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-75145572020-11-09 Dissipation in Non-Steady State Regulatory Circuits Szymańska-Rożek, Paulina Villamaina, Dario Miȩkisz, Jacek Walczak, Aleksandra M. Entropy (Basel) Article In order to respond to environmental signals, cells often use small molecular circuits to transmit information about their surroundings. Recently, motivated by specific examples in signaling and gene regulation, a body of work has focused on the properties of circuits that function out of equilibrium and dissipate energy. We briefly review the probabilistic measures of information and dissipation and use simple models to discuss and illustrate trade-offs between information and dissipation in biological circuits. We find that circuits with non-steady state initial conditions can transmit more information at small readout delays than steady state circuits. The dissipative cost of this additional information proves marginal compared to the steady state dissipation. Feedback does not significantly increase the transmitted information for out of steady state circuits but does decrease dissipative costs. Lastly, we discuss the case of bursty gene regulatory circuits that, even in the fast switching limit, function out of equilibrium. MDPI 2019-12-10 /pmc/articles/PMC7514557/ http://dx.doi.org/10.3390/e21121212 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Szymańska-Rożek, Paulina
Villamaina, Dario
Miȩkisz, Jacek
Walczak, Aleksandra M.
Dissipation in Non-Steady State Regulatory Circuits
title Dissipation in Non-Steady State Regulatory Circuits
title_full Dissipation in Non-Steady State Regulatory Circuits
title_fullStr Dissipation in Non-Steady State Regulatory Circuits
title_full_unstemmed Dissipation in Non-Steady State Regulatory Circuits
title_short Dissipation in Non-Steady State Regulatory Circuits
title_sort dissipation in non-steady state regulatory circuits
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7514557/
http://dx.doi.org/10.3390/e21121212
work_keys_str_mv AT szymanskarozekpaulina dissipationinnonsteadystateregulatorycircuits
AT villamainadario dissipationinnonsteadystateregulatorycircuits
AT miekiszjacek dissipationinnonsteadystateregulatorycircuits
AT walczakaleksandram dissipationinnonsteadystateregulatorycircuits