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Dissipation in Non-Steady State Regulatory Circuits
In order to respond to environmental signals, cells often use small molecular circuits to transmit information about their surroundings. Recently, motivated by specific examples in signaling and gene regulation, a body of work has focused on the properties of circuits that function out of equilibriu...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7514557/ http://dx.doi.org/10.3390/e21121212 |
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author | Szymańska-Rożek, Paulina Villamaina, Dario Miȩkisz, Jacek Walczak, Aleksandra M. |
author_facet | Szymańska-Rożek, Paulina Villamaina, Dario Miȩkisz, Jacek Walczak, Aleksandra M. |
author_sort | Szymańska-Rożek, Paulina |
collection | PubMed |
description | In order to respond to environmental signals, cells often use small molecular circuits to transmit information about their surroundings. Recently, motivated by specific examples in signaling and gene regulation, a body of work has focused on the properties of circuits that function out of equilibrium and dissipate energy. We briefly review the probabilistic measures of information and dissipation and use simple models to discuss and illustrate trade-offs between information and dissipation in biological circuits. We find that circuits with non-steady state initial conditions can transmit more information at small readout delays than steady state circuits. The dissipative cost of this additional information proves marginal compared to the steady state dissipation. Feedback does not significantly increase the transmitted information for out of steady state circuits but does decrease dissipative costs. Lastly, we discuss the case of bursty gene regulatory circuits that, even in the fast switching limit, function out of equilibrium. |
format | Online Article Text |
id | pubmed-7514557 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-75145572020-11-09 Dissipation in Non-Steady State Regulatory Circuits Szymańska-Rożek, Paulina Villamaina, Dario Miȩkisz, Jacek Walczak, Aleksandra M. Entropy (Basel) Article In order to respond to environmental signals, cells often use small molecular circuits to transmit information about their surroundings. Recently, motivated by specific examples in signaling and gene regulation, a body of work has focused on the properties of circuits that function out of equilibrium and dissipate energy. We briefly review the probabilistic measures of information and dissipation and use simple models to discuss and illustrate trade-offs between information and dissipation in biological circuits. We find that circuits with non-steady state initial conditions can transmit more information at small readout delays than steady state circuits. The dissipative cost of this additional information proves marginal compared to the steady state dissipation. Feedback does not significantly increase the transmitted information for out of steady state circuits but does decrease dissipative costs. Lastly, we discuss the case of bursty gene regulatory circuits that, even in the fast switching limit, function out of equilibrium. MDPI 2019-12-10 /pmc/articles/PMC7514557/ http://dx.doi.org/10.3390/e21121212 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Szymańska-Rożek, Paulina Villamaina, Dario Miȩkisz, Jacek Walczak, Aleksandra M. Dissipation in Non-Steady State Regulatory Circuits |
title | Dissipation in Non-Steady State Regulatory Circuits |
title_full | Dissipation in Non-Steady State Regulatory Circuits |
title_fullStr | Dissipation in Non-Steady State Regulatory Circuits |
title_full_unstemmed | Dissipation in Non-Steady State Regulatory Circuits |
title_short | Dissipation in Non-Steady State Regulatory Circuits |
title_sort | dissipation in non-steady state regulatory circuits |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7514557/ http://dx.doi.org/10.3390/e21121212 |
work_keys_str_mv | AT szymanskarozekpaulina dissipationinnonsteadystateregulatorycircuits AT villamainadario dissipationinnonsteadystateregulatorycircuits AT miekiszjacek dissipationinnonsteadystateregulatorycircuits AT walczakaleksandram dissipationinnonsteadystateregulatorycircuits |