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Approximations of Shannon Mutual Information for Discrete Variables with Applications to Neural Population Coding
Although Shannon mutual information has been widely used, its effective calculation is often difficult for many practical problems, including those in neural population coding. Asymptotic formulas based on Fisher information sometimes provide accurate approximations to the mutual information but thi...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7514724/ https://www.ncbi.nlm.nih.gov/pubmed/33266958 http://dx.doi.org/10.3390/e21030243 |
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author | Huang, Wentao Zhang, Kechen |
author_facet | Huang, Wentao Zhang, Kechen |
author_sort | Huang, Wentao |
collection | PubMed |
description | Although Shannon mutual information has been widely used, its effective calculation is often difficult for many practical problems, including those in neural population coding. Asymptotic formulas based on Fisher information sometimes provide accurate approximations to the mutual information but this approach is restricted to continuous variables because the calculation of Fisher information requires derivatives with respect to the encoded variables. In this paper, we consider information-theoretic bounds and approximations of the mutual information based on Kullback-Leibler divergence and Rényi divergence. We propose several information metrics to approximate Shannon mutual information in the context of neural population coding. While our asymptotic formulas all work for discrete variables, one of them has consistent performance and high accuracy regardless of whether the encoded variables are discrete or continuous. We performed numerical simulations and confirmed that our approximation formulas were highly accurate for approximating the mutual information between the stimuli and the responses of a large neural population. These approximation formulas may potentially bring convenience to the applications of information theory to many practical and theoretical problems. |
format | Online Article Text |
id | pubmed-7514724 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-75147242020-11-09 Approximations of Shannon Mutual Information for Discrete Variables with Applications to Neural Population Coding Huang, Wentao Zhang, Kechen Entropy (Basel) Article Although Shannon mutual information has been widely used, its effective calculation is often difficult for many practical problems, including those in neural population coding. Asymptotic formulas based on Fisher information sometimes provide accurate approximations to the mutual information but this approach is restricted to continuous variables because the calculation of Fisher information requires derivatives with respect to the encoded variables. In this paper, we consider information-theoretic bounds and approximations of the mutual information based on Kullback-Leibler divergence and Rényi divergence. We propose several information metrics to approximate Shannon mutual information in the context of neural population coding. While our asymptotic formulas all work for discrete variables, one of them has consistent performance and high accuracy regardless of whether the encoded variables are discrete or continuous. We performed numerical simulations and confirmed that our approximation formulas were highly accurate for approximating the mutual information between the stimuli and the responses of a large neural population. These approximation formulas may potentially bring convenience to the applications of information theory to many practical and theoretical problems. MDPI 2019-03-04 /pmc/articles/PMC7514724/ /pubmed/33266958 http://dx.doi.org/10.3390/e21030243 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Huang, Wentao Zhang, Kechen Approximations of Shannon Mutual Information for Discrete Variables with Applications to Neural Population Coding |
title | Approximations of Shannon Mutual Information for Discrete Variables with Applications to Neural Population Coding |
title_full | Approximations of Shannon Mutual Information for Discrete Variables with Applications to Neural Population Coding |
title_fullStr | Approximations of Shannon Mutual Information for Discrete Variables with Applications to Neural Population Coding |
title_full_unstemmed | Approximations of Shannon Mutual Information for Discrete Variables with Applications to Neural Population Coding |
title_short | Approximations of Shannon Mutual Information for Discrete Variables with Applications to Neural Population Coding |
title_sort | approximations of shannon mutual information for discrete variables with applications to neural population coding |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7514724/ https://www.ncbi.nlm.nih.gov/pubmed/33266958 http://dx.doi.org/10.3390/e21030243 |
work_keys_str_mv | AT huangwentao approximationsofshannonmutualinformationfordiscretevariableswithapplicationstoneuralpopulationcoding AT zhangkechen approximationsofshannonmutualinformationfordiscretevariableswithapplicationstoneuralpopulationcoding |