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Diffusion Equation-Assisted Markov Chain Monte Carlo Methods for the Inverse Radiative Transfer Equation
Optical tomography is the process of reconstructing the optical properties of biological tissue using measurements of incoming and outgoing light intensity at the tissue boundary. Mathematically, light propagation is modeled by the radiative transfer equation (RTE), and optical tomography amounts to...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7514771/ https://www.ncbi.nlm.nih.gov/pubmed/33267006 http://dx.doi.org/10.3390/e21030291 |
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author | Li, Qin Newton, Kit |
author_facet | Li, Qin Newton, Kit |
author_sort | Li, Qin |
collection | PubMed |
description | Optical tomography is the process of reconstructing the optical properties of biological tissue using measurements of incoming and outgoing light intensity at the tissue boundary. Mathematically, light propagation is modeled by the radiative transfer equation (RTE), and optical tomography amounts to reconstructing the scattering coefficient in the RTE using the boundary measurements. In the strong scattering regime, the RTE is asymptotically equivalent to the diffusion equation (DE), and the inverse problem becomes reconstructing the diffusion coefficient using Dirichlet and Neumann data on the boundary. We study this problem in the Bayesian framework, meaning that we examine the posterior distribution of the scattering coefficient after the measurements have been taken. However, sampling from this distribution is computationally expensive, since to evaluate each Markov Chain Monte Carlo (MCMC) sample, one needs to run the RTE solvers multiple times. We therefore propose the DE-assisted two-level MCMC technique, in which bad samples are filtered out using DE solvers that are significantly cheaper than RTE solvers. This allows us to make sampling from the RTE posterior distribution computationally feasible. |
format | Online Article Text |
id | pubmed-7514771 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-75147712020-11-09 Diffusion Equation-Assisted Markov Chain Monte Carlo Methods for the Inverse Radiative Transfer Equation Li, Qin Newton, Kit Entropy (Basel) Article Optical tomography is the process of reconstructing the optical properties of biological tissue using measurements of incoming and outgoing light intensity at the tissue boundary. Mathematically, light propagation is modeled by the radiative transfer equation (RTE), and optical tomography amounts to reconstructing the scattering coefficient in the RTE using the boundary measurements. In the strong scattering regime, the RTE is asymptotically equivalent to the diffusion equation (DE), and the inverse problem becomes reconstructing the diffusion coefficient using Dirichlet and Neumann data on the boundary. We study this problem in the Bayesian framework, meaning that we examine the posterior distribution of the scattering coefficient after the measurements have been taken. However, sampling from this distribution is computationally expensive, since to evaluate each Markov Chain Monte Carlo (MCMC) sample, one needs to run the RTE solvers multiple times. We therefore propose the DE-assisted two-level MCMC technique, in which bad samples are filtered out using DE solvers that are significantly cheaper than RTE solvers. This allows us to make sampling from the RTE posterior distribution computationally feasible. MDPI 2019-03-18 /pmc/articles/PMC7514771/ /pubmed/33267006 http://dx.doi.org/10.3390/e21030291 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Li, Qin Newton, Kit Diffusion Equation-Assisted Markov Chain Monte Carlo Methods for the Inverse Radiative Transfer Equation |
title | Diffusion Equation-Assisted Markov Chain Monte Carlo Methods for the Inverse Radiative Transfer Equation |
title_full | Diffusion Equation-Assisted Markov Chain Monte Carlo Methods for the Inverse Radiative Transfer Equation |
title_fullStr | Diffusion Equation-Assisted Markov Chain Monte Carlo Methods for the Inverse Radiative Transfer Equation |
title_full_unstemmed | Diffusion Equation-Assisted Markov Chain Monte Carlo Methods for the Inverse Radiative Transfer Equation |
title_short | Diffusion Equation-Assisted Markov Chain Monte Carlo Methods for the Inverse Radiative Transfer Equation |
title_sort | diffusion equation-assisted markov chain monte carlo methods for the inverse radiative transfer equation |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7514771/ https://www.ncbi.nlm.nih.gov/pubmed/33267006 http://dx.doi.org/10.3390/e21030291 |
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