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Entropy of Simulated Liquids Using Multiscale Cell Correlation
Accurately calculating the entropy of liquids is an important goal, given that many processes take place in the liquid phase. Of almost equal importance is understanding the values obtained. However, there are few methods that can calculate the entropy of such systems, and fewer still to make sense...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7515279/ https://www.ncbi.nlm.nih.gov/pubmed/33267464 http://dx.doi.org/10.3390/e21080750 |
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author | Ali, Hafiz Saqib Higham, Jonathan Henchman, Richard H. |
author_facet | Ali, Hafiz Saqib Higham, Jonathan Henchman, Richard H. |
author_sort | Ali, Hafiz Saqib |
collection | PubMed |
description | Accurately calculating the entropy of liquids is an important goal, given that many processes take place in the liquid phase. Of almost equal importance is understanding the values obtained. However, there are few methods that can calculate the entropy of such systems, and fewer still to make sense of the values obtained. We present our multiscale cell correlation (MCC) method to calculate the entropy of liquids from molecular dynamics simulations. The method uses forces and torques at the molecule and united-atom levels and probability distributions of molecular coordinations and conformations. The main differences with previous work are the consistent treatment of the mean-field cell approximation to the approriate degrees of freedom, the separation of the force and torque covariance matrices, and the inclusion of conformation correlation for molecules with multiple dihedrals. MCC is applied to a broader set of 56 important industrial liquids modeled using the Generalized AMBER Force Field (GAFF) and Optimized Potentials for Liquid Simulations (OPLS) force fields with 1.14*CM1A charges. Unsigned errors versus experimental entropies are 8.7 J K [Formula: see text] mol [Formula: see text] for GAFF and 9.8 J K [Formula: see text] mol [Formula: see text] for OPLS. This is significantly better than the 2-Phase Thermodynamics method for the subset of molecules in common, which is the only other method that has been applied to such systems. MCC makes clear why the entropy has the value it does by providing a decomposition in terms of translational and rotational vibrational entropy and topographical entropy at the molecular and united-atom levels. |
format | Online Article Text |
id | pubmed-7515279 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-75152792020-11-09 Entropy of Simulated Liquids Using Multiscale Cell Correlation Ali, Hafiz Saqib Higham, Jonathan Henchman, Richard H. Entropy (Basel) Article Accurately calculating the entropy of liquids is an important goal, given that many processes take place in the liquid phase. Of almost equal importance is understanding the values obtained. However, there are few methods that can calculate the entropy of such systems, and fewer still to make sense of the values obtained. We present our multiscale cell correlation (MCC) method to calculate the entropy of liquids from molecular dynamics simulations. The method uses forces and torques at the molecule and united-atom levels and probability distributions of molecular coordinations and conformations. The main differences with previous work are the consistent treatment of the mean-field cell approximation to the approriate degrees of freedom, the separation of the force and torque covariance matrices, and the inclusion of conformation correlation for molecules with multiple dihedrals. MCC is applied to a broader set of 56 important industrial liquids modeled using the Generalized AMBER Force Field (GAFF) and Optimized Potentials for Liquid Simulations (OPLS) force fields with 1.14*CM1A charges. Unsigned errors versus experimental entropies are 8.7 J K [Formula: see text] mol [Formula: see text] for GAFF and 9.8 J K [Formula: see text] mol [Formula: see text] for OPLS. This is significantly better than the 2-Phase Thermodynamics method for the subset of molecules in common, which is the only other method that has been applied to such systems. MCC makes clear why the entropy has the value it does by providing a decomposition in terms of translational and rotational vibrational entropy and topographical entropy at the molecular and united-atom levels. MDPI 2019-07-31 /pmc/articles/PMC7515279/ /pubmed/33267464 http://dx.doi.org/10.3390/e21080750 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Ali, Hafiz Saqib Higham, Jonathan Henchman, Richard H. Entropy of Simulated Liquids Using Multiscale Cell Correlation |
title | Entropy of Simulated Liquids Using Multiscale Cell Correlation |
title_full | Entropy of Simulated Liquids Using Multiscale Cell Correlation |
title_fullStr | Entropy of Simulated Liquids Using Multiscale Cell Correlation |
title_full_unstemmed | Entropy of Simulated Liquids Using Multiscale Cell Correlation |
title_short | Entropy of Simulated Liquids Using Multiscale Cell Correlation |
title_sort | entropy of simulated liquids using multiscale cell correlation |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7515279/ https://www.ncbi.nlm.nih.gov/pubmed/33267464 http://dx.doi.org/10.3390/e21080750 |
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