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Phase Transitions in Spatial Connectivity during Influenza Pandemics

We investigated phase transitions in spatial connectivity during influenza pandemics, relating epidemic thresholds to the formation of clusters defined in terms of average infection. We employed a large-scale agent-based model of influenza spread at a national level: the Australian Census-based Epid...

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Detalles Bibliográficos
Autores principales: Harding, Nathan, Spinney, Richard, Prokopenko, Mikhail
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7516543/
https://www.ncbi.nlm.nih.gov/pubmed/33285908
http://dx.doi.org/10.3390/e22020133
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author Harding, Nathan
Spinney, Richard
Prokopenko, Mikhail
author_facet Harding, Nathan
Spinney, Richard
Prokopenko, Mikhail
author_sort Harding, Nathan
collection PubMed
description We investigated phase transitions in spatial connectivity during influenza pandemics, relating epidemic thresholds to the formation of clusters defined in terms of average infection. We employed a large-scale agent-based model of influenza spread at a national level: the Australian Census-based Epidemic Model (AceMod). In using the AceMod simulation framework, which leverages the 2016 Australian census data and generates a surrogate population of ≈23.4 million agents, we analysed the spread of simulated epidemics across geographical regions defined according to the Australian Statistical Geography Standard. We considered adjacent geographic regions with above average prevalence to be connected, and the resultant spatial connectivity was then analysed at specific time points of the epidemic. Specifically, we focused on the times when the epidemic prevalence peaks, either nationally (first wave) or at a community level (second wave). Using the percolation theory, we quantified the connectivity and identified critical regimes corresponding to abrupt changes in patterns of the spatial distribution of infection. The analysis of criticality is confirmed by computing Fisher Information in a model-independent way. The results suggest that the post-critical phase is characterised by different spatial patterns of infection developed during the first or second waves (distinguishing urban and rural epidemic peaks).
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spelling pubmed-75165432020-11-09 Phase Transitions in Spatial Connectivity during Influenza Pandemics Harding, Nathan Spinney, Richard Prokopenko, Mikhail Entropy (Basel) Article We investigated phase transitions in spatial connectivity during influenza pandemics, relating epidemic thresholds to the formation of clusters defined in terms of average infection. We employed a large-scale agent-based model of influenza spread at a national level: the Australian Census-based Epidemic Model (AceMod). In using the AceMod simulation framework, which leverages the 2016 Australian census data and generates a surrogate population of ≈23.4 million agents, we analysed the spread of simulated epidemics across geographical regions defined according to the Australian Statistical Geography Standard. We considered adjacent geographic regions with above average prevalence to be connected, and the resultant spatial connectivity was then analysed at specific time points of the epidemic. Specifically, we focused on the times when the epidemic prevalence peaks, either nationally (first wave) or at a community level (second wave). Using the percolation theory, we quantified the connectivity and identified critical regimes corresponding to abrupt changes in patterns of the spatial distribution of infection. The analysis of criticality is confirmed by computing Fisher Information in a model-independent way. The results suggest that the post-critical phase is characterised by different spatial patterns of infection developed during the first or second waves (distinguishing urban and rural epidemic peaks). MDPI 2020-01-22 /pmc/articles/PMC7516543/ /pubmed/33285908 http://dx.doi.org/10.3390/e22020133 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Harding, Nathan
Spinney, Richard
Prokopenko, Mikhail
Phase Transitions in Spatial Connectivity during Influenza Pandemics
title Phase Transitions in Spatial Connectivity during Influenza Pandemics
title_full Phase Transitions in Spatial Connectivity during Influenza Pandemics
title_fullStr Phase Transitions in Spatial Connectivity during Influenza Pandemics
title_full_unstemmed Phase Transitions in Spatial Connectivity during Influenza Pandemics
title_short Phase Transitions in Spatial Connectivity during Influenza Pandemics
title_sort phase transitions in spatial connectivity during influenza pandemics
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7516543/
https://www.ncbi.nlm.nih.gov/pubmed/33285908
http://dx.doi.org/10.3390/e22020133
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