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On Geometry of Information Flow for Causal Inference
Causal inference is perhaps one of the most fundamental concepts in science, beginning originally from the works of some of the ancient philosophers, through today, but also weaved strongly in current work from statisticians, machine learning experts, and scientists from many other fields. This pape...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7516872/ https://www.ncbi.nlm.nih.gov/pubmed/33286168 http://dx.doi.org/10.3390/e22040396 |
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author | Surasinghe, Sudam Bollt, Erik M. |
author_facet | Surasinghe, Sudam Bollt, Erik M. |
author_sort | Surasinghe, Sudam |
collection | PubMed |
description | Causal inference is perhaps one of the most fundamental concepts in science, beginning originally from the works of some of the ancient philosophers, through today, but also weaved strongly in current work from statisticians, machine learning experts, and scientists from many other fields. This paper takes the perspective of information flow, which includes the Nobel prize winning work on Granger-causality, and the recently highly popular transfer entropy, these being probabilistic in nature. Our main contribution will be to develop analysis tools that will allow a geometric interpretation of information flow as a causal inference indicated by positive transfer entropy. We will describe the effective dimensionality of an underlying manifold as projected into the outcome space that summarizes information flow. Therefore, contrasting the probabilistic and geometric perspectives, we will introduce a new measure of causal inference based on the fractal correlation dimension conditionally applied to competing explanations of future forecasts, which we will write [Formula: see text]. This avoids some of the boundedness issues that we show exist for the transfer entropy, [Formula: see text]. We will highlight our discussions with data developed from synthetic models of successively more complex nature: these include the Hénon map example, and finally a real physiological example relating breathing and heart rate function. |
format | Online Article Text |
id | pubmed-7516872 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-75168722020-11-09 On Geometry of Information Flow for Causal Inference Surasinghe, Sudam Bollt, Erik M. Entropy (Basel) Article Causal inference is perhaps one of the most fundamental concepts in science, beginning originally from the works of some of the ancient philosophers, through today, but also weaved strongly in current work from statisticians, machine learning experts, and scientists from many other fields. This paper takes the perspective of information flow, which includes the Nobel prize winning work on Granger-causality, and the recently highly popular transfer entropy, these being probabilistic in nature. Our main contribution will be to develop analysis tools that will allow a geometric interpretation of information flow as a causal inference indicated by positive transfer entropy. We will describe the effective dimensionality of an underlying manifold as projected into the outcome space that summarizes information flow. Therefore, contrasting the probabilistic and geometric perspectives, we will introduce a new measure of causal inference based on the fractal correlation dimension conditionally applied to competing explanations of future forecasts, which we will write [Formula: see text]. This avoids some of the boundedness issues that we show exist for the transfer entropy, [Formula: see text]. We will highlight our discussions with data developed from synthetic models of successively more complex nature: these include the Hénon map example, and finally a real physiological example relating breathing and heart rate function. MDPI 2020-03-30 /pmc/articles/PMC7516872/ /pubmed/33286168 http://dx.doi.org/10.3390/e22040396 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Surasinghe, Sudam Bollt, Erik M. On Geometry of Information Flow for Causal Inference |
title | On Geometry of Information Flow for Causal Inference |
title_full | On Geometry of Information Flow for Causal Inference |
title_fullStr | On Geometry of Information Flow for Causal Inference |
title_full_unstemmed | On Geometry of Information Flow for Causal Inference |
title_short | On Geometry of Information Flow for Causal Inference |
title_sort | on geometry of information flow for causal inference |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7516872/ https://www.ncbi.nlm.nih.gov/pubmed/33286168 http://dx.doi.org/10.3390/e22040396 |
work_keys_str_mv | AT surasinghesudam ongeometryofinformationflowforcausalinference AT bollterikm ongeometryofinformationflowforcausalinference |