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An Efficient, Parallelized Algorithm for Optimal Conditional Entropy-Based Feature Selection
In Machine Learning, feature selection is an important step in classifier design. It consists of finding a subset of features that is optimum for a given cost function. One possibility to solve feature selection is to organize all possible feature subsets into a Boolean lattice and to exploit the fa...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7516975/ https://www.ncbi.nlm.nih.gov/pubmed/33286261 http://dx.doi.org/10.3390/e22040492 |
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author | Estrela, Gustavo Gubitoso, Marco Dimas Ferreira, Carlos Eduardo Barrera, Junior Reis, Marcelo S. |
author_facet | Estrela, Gustavo Gubitoso, Marco Dimas Ferreira, Carlos Eduardo Barrera, Junior Reis, Marcelo S. |
author_sort | Estrela, Gustavo |
collection | PubMed |
description | In Machine Learning, feature selection is an important step in classifier design. It consists of finding a subset of features that is optimum for a given cost function. One possibility to solve feature selection is to organize all possible feature subsets into a Boolean lattice and to exploit the fact that the costs of chains in that lattice describe U-shaped curves. Minimization of such cost function is known as the U-curve problem. Recently, a study proposed U-Curve Search (UCS), an optimal algorithm for that problem, which was successfully used for feature selection. However, despite of the algorithm optimality, the UCS required time in computational assays was exponential on the number of features. Here, we report that such scalability issue arises due to the fact that the U-curve problem is NP-hard. In the sequence, we introduce the Parallel U-Curve Search (PUCS), a new algorithm for the U-curve problem. In PUCS, we present a novel way to partition the search space into smaller Boolean lattices, thus rendering the algorithm highly parallelizable. We also provide computational assays with both synthetic data and Machine Learning datasets, where the PUCS performance was assessed against UCS and other golden standard algorithms in feature selection. |
format | Online Article Text |
id | pubmed-7516975 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-75169752020-11-09 An Efficient, Parallelized Algorithm for Optimal Conditional Entropy-Based Feature Selection Estrela, Gustavo Gubitoso, Marco Dimas Ferreira, Carlos Eduardo Barrera, Junior Reis, Marcelo S. Entropy (Basel) Article In Machine Learning, feature selection is an important step in classifier design. It consists of finding a subset of features that is optimum for a given cost function. One possibility to solve feature selection is to organize all possible feature subsets into a Boolean lattice and to exploit the fact that the costs of chains in that lattice describe U-shaped curves. Minimization of such cost function is known as the U-curve problem. Recently, a study proposed U-Curve Search (UCS), an optimal algorithm for that problem, which was successfully used for feature selection. However, despite of the algorithm optimality, the UCS required time in computational assays was exponential on the number of features. Here, we report that such scalability issue arises due to the fact that the U-curve problem is NP-hard. In the sequence, we introduce the Parallel U-Curve Search (PUCS), a new algorithm for the U-curve problem. In PUCS, we present a novel way to partition the search space into smaller Boolean lattices, thus rendering the algorithm highly parallelizable. We also provide computational assays with both synthetic data and Machine Learning datasets, where the PUCS performance was assessed against UCS and other golden standard algorithms in feature selection. MDPI 2020-04-24 /pmc/articles/PMC7516975/ /pubmed/33286261 http://dx.doi.org/10.3390/e22040492 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Estrela, Gustavo Gubitoso, Marco Dimas Ferreira, Carlos Eduardo Barrera, Junior Reis, Marcelo S. An Efficient, Parallelized Algorithm for Optimal Conditional Entropy-Based Feature Selection |
title | An Efficient, Parallelized Algorithm for Optimal Conditional Entropy-Based Feature Selection |
title_full | An Efficient, Parallelized Algorithm for Optimal Conditional Entropy-Based Feature Selection |
title_fullStr | An Efficient, Parallelized Algorithm for Optimal Conditional Entropy-Based Feature Selection |
title_full_unstemmed | An Efficient, Parallelized Algorithm for Optimal Conditional Entropy-Based Feature Selection |
title_short | An Efficient, Parallelized Algorithm for Optimal Conditional Entropy-Based Feature Selection |
title_sort | efficient, parallelized algorithm for optimal conditional entropy-based feature selection |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7516975/ https://www.ncbi.nlm.nih.gov/pubmed/33286261 http://dx.doi.org/10.3390/e22040492 |
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