Cargando…

Mapping long‐range contacts between risk loci and target genes in human diseases with Capture Hi‐C

Detalles Bibliográficos
Autores principales:	Cao, Canhui, Xu, Qian, Lin, Shitong, Zhi, Wenhua, Lazare, Cordelle, Meng, Yifan, Wu, Ping, Gao, Peipei, Li, Kezhen, Wei, Juncheng, Wu, Peng, Li, Guoliang
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	John Wiley and Sons Inc. 2020
Materias:	Letter to Editor
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7520083/ https://www.ncbi.nlm.nih.gov/pubmed/32997408 http://dx.doi.org/10.1002/ctm2.183

Ejemplares similares

LOXL2 Expression Status Is Correlated With Molecular Characterizations of Cervical Carcinoma and Associated With Poor Cancer Survival via Epithelial-Mesenchymal Transition (EMT) Phenotype
por: Cao, Canhui, et al.
Publicado: (2020)

Immune checkpoint inhibitors in the treatment of virus-associated cancers
por: Gao, Peipei, et al.
Publicado: (2019)

HPV‐CCDC106 integration promotes cervical cancer progression by facilitating the high expression of CCDC106 after HPV E6 splicing
por: Zhi, Wenhua, et al.
Publicado: (2022)

Screening of Cervical Cancer with Self-Collected Cervical Samples and Next-Generation Sequencing
por: Fan, Yubo, et al.
Publicado: (2018)

Clinical Value of Combining (18)F-FDG PET/CT and Routine Serum Tumor Markers in The Early Detection of Recurrence Among Follow-up Patients Treated for Cervical Squamous Cell Carcinoma
por: Sookha, Rajiv Rai, et al.
Publicado: (2018)

Fine mapping chromatin contacts in capture Hi-C data
por: Eijsbouts, Christiaan Q, et al.
Publicado: (2019)

Comprehensive analysis of LDHAP5 pseudogene expression and potential pathogenesis in ovarian serous cystadenocarcinoma
por: Lin, Shitong, et al.
Publicado: (2020)

Comprehensive analysis of the value of RAB family genes in prognosis of breast invasive carcinoma
por: Lin, Shitong, et al.
Publicado: (2020)

HiCEnterprise: identifying long range chromosomal contacts in Hi-C data
por: Kranas, Hanna, et al.
Publicado: (2021)

Comparison of one-week versus three-week paclitaxel for advanced pan-carcinomas: systematic review and meta-analysis
por: Lin, Shitong, et al.
Publicado: (2022)

Capture Hi-C reveals novel candidate genes and complex long-range interactions with related autoimmune risk loci
por: Martin, Paul, et al.
Publicado: (2015)

RAB2A promotes cervical cancer progression as revealed by comprehensive analysis of HPV integration and proteome in longitudinal cervical samples
por: Meng, Yifan, et al.
Publicado: (2022)

Evaluation of Cervical Intraepithelial Neoplasia Occurrence Following the Recorded Onset of Persistent High-Risk Human Papillomavirus Infection: A Retrospective Study on Infection Duration
por: Lazare, Cordelle, et al.
Publicado: (2019)

Capture Hi-C identifies the chromatin interactome of colorectal cancer risk loci
por: Jäger, Roland, et al.
Publicado: (2015)

HiCmapTools: a tool to access HiC contact maps
por: Chang, Jia-Ming, et al.
Publicado: (2022)

The DLO Hi-C Tool for Digestion-Ligation-Only Hi-C Chromosome Conformation Capture Data Analysis
por: Hong, Ping, et al.
Publicado: (2020)

Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C
por: Dryden, Nicola H., et al.
Publicado: (2014)

Key Role of MCUR1 in Malignant Progression of Breast Cancer
por: Gao, Peipei, et al.
Publicado: (2021)

Association of CLDN6 and CLDN10 With Immune Microenvironment in Ovarian Cancer: A Study of the Claudin Family
por: Gao, Peipei, et al.
Publicado: (2021)

Capture Hi-C identifies putative target genes at 33 breast cancer risk loci
por: Baxter, Joseph S., et al.
Publicado: (2018)

HiC-spector: a matrix library for spectral and reproducibility analysis of Hi-C contact maps
por: Yan, Koon-Kiu, et al.
Publicado: (2017)

Computational Processing and Quality Control of Hi-C, Capture Hi-C and Capture-C Data
por: Hansen, Peter, et al.
Publicado: (2019)

HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps
por: Du, Yuxuan, et al.
Publicado: (2022)

EnHiC: learning fine-resolution Hi-C contact maps using a generative adversarial framework
por: Hu, Yangyang, et al.
Publicado: (2021)

Comparison of Capture Hi-C Analytical Pipelines
por: Aljogol, Dina, et al.
Publicado: (2022)

Species-Level Deconvolution of Metagenome Assemblies with Hi-C–Based Contact Probability Maps
por: Burton, Joshua N., et al.
Publicado: (2014)

Epiphany: predicting Hi-C contact maps from 1D epigenomic signals
por: Yang, Rui, et al.
Publicado: (2023)

HiCRep.py: fast comparison of Hi-C contact matrices in Python
por: Lin, Dejun, et al.
Publicado: (2021)

Single-nucleus RNA sequencing reveals heterogenous microenvironments and specific drug response between cervical squamous cell carcinoma and adenocarcinoma
por: Lin, Shitong, et al.
Publicado: (2023)

HiCUP: pipeline for mapping and processing Hi-C data
por: Wingett, Steven, et al.
Publicado: (2015)

APOBEC3G expression correlates with unfavorable prognosis and immune infiltration in kidney renal clear cell carcinoma
por: Peng, Ting, et al.
Publicado: (2022)

CaptureProbe: a java tool for designing probes for capture Hi-C applications
por: Ma, Yun-Fei, et al.
Publicado: (2020)

covNorm: An R package for coverage based normalization of Hi-C and capture Hi-C data
por: Kim, Kyukwang, et al.
Publicado: (2021)

Capturing 3D Chromatin Maps of Human Primary Monocytes: Insights From High-Resolution Hi-C
por: Xia, Yu, et al.
Publicado: (2022)

Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization
por: Wolff, Joachim, et al.
Publicado: (2020)

Identification and utilization of copy number information for correcting Hi-C contact map of cancer cell lines
por: Khalil, Ahmed Ibrahim Samir, et al.
Publicado: (2020)

Complex multi-enhancer contacts captured by Genome Architecture Mapping (GAM)
por: Beagrie, Robert A., et al.
Publicado: (2017)

Algorithmic considerations when analysing capture Hi-C data
por: Disney-Hogg, Linden, et al.
Publicado: (2022)

MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments
por: Juric, Ivan, et al.
Publicado: (2019)

MaxHiC: A robust background correction model to identify biologically relevant chromatin interactions in Hi-C and capture Hi-C experiments
por: Alinejad-Rokny, Hamid, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_tmq13op6mnh61kgvt67925bhtr