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A four‐long noncoding RNA signature predicts survival of hepatocellular carcinoma patients
BACKGROUND: Hepatocellular carcinoma (HCC) is a common neoplasm located in the liver. Accumulating evidence has highlighted that long noncoding RNAs (lncRNAs) are correlated with the survival of HCC patients. This study focuses on finding a lncRNA signature to predict the prognostic risk of HCC pati...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7521318/ https://www.ncbi.nlm.nih.gov/pubmed/32474975 http://dx.doi.org/10.1002/jcla.23377 |
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author | Jiang, Haitao Zhao, Lianhe Chen, Yunjie Sun, Liang |
author_facet | Jiang, Haitao Zhao, Lianhe Chen, Yunjie Sun, Liang |
author_sort | Jiang, Haitao |
collection | PubMed |
description | BACKGROUND: Hepatocellular carcinoma (HCC) is a common neoplasm located in the liver. Accumulating evidence has highlighted that long noncoding RNAs (lncRNAs) are correlated with the survival of HCC patients. This study focuses on finding a lncRNA signature to predict the prognostic risk of HCC patients. METHODS: Statistical and machine learning analyses were conducted to analyze the lncRNA expression data and corresponding clinical data of 180 HCC patients collected from the public online Tanric and The Cancer Genome Atlas (TCGA) databases. RESULTS: From the training dataset, we obtained the four‐lncRNA model comprising RP11‐495K9.6, RP11‐96O20.2, RP11‐359K18.3, and LINC00556 which can divide HCC patients into two different groups with significantly different prognosis (n = 90, median 1.81, 95% confidence interval [CI]: 1.50‐4.91 vs 8.56 years, 95% CI: 6.96‐9.97, log‐rank test P < .001). The test dataset confirmed the prognostic ability of the signature (n = 90, median 1.95, 95% CI: 1.14‐4.08 vs 5.80 years, 95% CI: 3.11‐6.82, log‐rank test P = .007). Receiver operating characteristic curve displayed the better prediction efficiency of the four‐lncRNA signature than the tumor/node/metastasis stage. Cox analysis showed the four‐lncRNA signature was an independent predictor of HCC prognosis. CONCLUSION: The four‐lncRNA signature can be used as an independent biomarker for HCC patients to predict the prognostic risk. |
format | Online Article Text |
id | pubmed-7521318 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-75213182020-10-02 A four‐long noncoding RNA signature predicts survival of hepatocellular carcinoma patients Jiang, Haitao Zhao, Lianhe Chen, Yunjie Sun, Liang J Clin Lab Anal Research Articles BACKGROUND: Hepatocellular carcinoma (HCC) is a common neoplasm located in the liver. Accumulating evidence has highlighted that long noncoding RNAs (lncRNAs) are correlated with the survival of HCC patients. This study focuses on finding a lncRNA signature to predict the prognostic risk of HCC patients. METHODS: Statistical and machine learning analyses were conducted to analyze the lncRNA expression data and corresponding clinical data of 180 HCC patients collected from the public online Tanric and The Cancer Genome Atlas (TCGA) databases. RESULTS: From the training dataset, we obtained the four‐lncRNA model comprising RP11‐495K9.6, RP11‐96O20.2, RP11‐359K18.3, and LINC00556 which can divide HCC patients into two different groups with significantly different prognosis (n = 90, median 1.81, 95% confidence interval [CI]: 1.50‐4.91 vs 8.56 years, 95% CI: 6.96‐9.97, log‐rank test P < .001). The test dataset confirmed the prognostic ability of the signature (n = 90, median 1.95, 95% CI: 1.14‐4.08 vs 5.80 years, 95% CI: 3.11‐6.82, log‐rank test P = .007). Receiver operating characteristic curve displayed the better prediction efficiency of the four‐lncRNA signature than the tumor/node/metastasis stage. Cox analysis showed the four‐lncRNA signature was an independent predictor of HCC prognosis. CONCLUSION: The four‐lncRNA signature can be used as an independent biomarker for HCC patients to predict the prognostic risk. John Wiley and Sons Inc. 2020-05-30 /pmc/articles/PMC7521318/ /pubmed/32474975 http://dx.doi.org/10.1002/jcla.23377 Text en © 2020 The Authors. Journal of Clinical Laboratory Analysis published by Wiley Periodicals LLC. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Jiang, Haitao Zhao, Lianhe Chen, Yunjie Sun, Liang A four‐long noncoding RNA signature predicts survival of hepatocellular carcinoma patients |
title | A four‐long noncoding RNA signature predicts survival of hepatocellular carcinoma patients |
title_full | A four‐long noncoding RNA signature predicts survival of hepatocellular carcinoma patients |
title_fullStr | A four‐long noncoding RNA signature predicts survival of hepatocellular carcinoma patients |
title_full_unstemmed | A four‐long noncoding RNA signature predicts survival of hepatocellular carcinoma patients |
title_short | A four‐long noncoding RNA signature predicts survival of hepatocellular carcinoma patients |
title_sort | four‐long noncoding rna signature predicts survival of hepatocellular carcinoma patients |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7521318/ https://www.ncbi.nlm.nih.gov/pubmed/32474975 http://dx.doi.org/10.1002/jcla.23377 |
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