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A four‐long noncoding RNA signature predicts survival of hepatocellular carcinoma patients

BACKGROUND: Hepatocellular carcinoma (HCC) is a common neoplasm located in the liver. Accumulating evidence has highlighted that long noncoding RNAs (lncRNAs) are correlated with the survival of HCC patients. This study focuses on finding a lncRNA signature to predict the prognostic risk of HCC pati...

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Autores principales: Jiang, Haitao, Zhao, Lianhe, Chen, Yunjie, Sun, Liang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7521318/
https://www.ncbi.nlm.nih.gov/pubmed/32474975
http://dx.doi.org/10.1002/jcla.23377
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author Jiang, Haitao
Zhao, Lianhe
Chen, Yunjie
Sun, Liang
author_facet Jiang, Haitao
Zhao, Lianhe
Chen, Yunjie
Sun, Liang
author_sort Jiang, Haitao
collection PubMed
description BACKGROUND: Hepatocellular carcinoma (HCC) is a common neoplasm located in the liver. Accumulating evidence has highlighted that long noncoding RNAs (lncRNAs) are correlated with the survival of HCC patients. This study focuses on finding a lncRNA signature to predict the prognostic risk of HCC patients. METHODS: Statistical and machine learning analyses were conducted to analyze the lncRNA expression data and corresponding clinical data of 180 HCC patients collected from the public online Tanric and The Cancer Genome Atlas (TCGA) databases. RESULTS: From the training dataset, we obtained the four‐lncRNA model comprising RP11‐495K9.6, RP11‐96O20.2, RP11‐359K18.3, and LINC00556 which can divide HCC patients into two different groups with significantly different prognosis (n = 90, median 1.81, 95% confidence interval [CI]: 1.50‐4.91 vs 8.56 years, 95% CI: 6.96‐9.97, log‐rank test P < .001). The test dataset confirmed the prognostic ability of the signature (n = 90, median 1.95, 95% CI: 1.14‐4.08 vs 5.80 years, 95% CI: 3.11‐6.82, log‐rank test P = .007). Receiver operating characteristic curve displayed the better prediction efficiency of the four‐lncRNA signature than the tumor/node/metastasis stage. Cox analysis showed the four‐lncRNA signature was an independent predictor of HCC prognosis. CONCLUSION: The four‐lncRNA signature can be used as an independent biomarker for HCC patients to predict the prognostic risk.
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spelling pubmed-75213182020-10-02 A four‐long noncoding RNA signature predicts survival of hepatocellular carcinoma patients Jiang, Haitao Zhao, Lianhe Chen, Yunjie Sun, Liang J Clin Lab Anal Research Articles BACKGROUND: Hepatocellular carcinoma (HCC) is a common neoplasm located in the liver. Accumulating evidence has highlighted that long noncoding RNAs (lncRNAs) are correlated with the survival of HCC patients. This study focuses on finding a lncRNA signature to predict the prognostic risk of HCC patients. METHODS: Statistical and machine learning analyses were conducted to analyze the lncRNA expression data and corresponding clinical data of 180 HCC patients collected from the public online Tanric and The Cancer Genome Atlas (TCGA) databases. RESULTS: From the training dataset, we obtained the four‐lncRNA model comprising RP11‐495K9.6, RP11‐96O20.2, RP11‐359K18.3, and LINC00556 which can divide HCC patients into two different groups with significantly different prognosis (n = 90, median 1.81, 95% confidence interval [CI]: 1.50‐4.91 vs 8.56 years, 95% CI: 6.96‐9.97, log‐rank test P < .001). The test dataset confirmed the prognostic ability of the signature (n = 90, median 1.95, 95% CI: 1.14‐4.08 vs 5.80 years, 95% CI: 3.11‐6.82, log‐rank test P = .007). Receiver operating characteristic curve displayed the better prediction efficiency of the four‐lncRNA signature than the tumor/node/metastasis stage. Cox analysis showed the four‐lncRNA signature was an independent predictor of HCC prognosis. CONCLUSION: The four‐lncRNA signature can be used as an independent biomarker for HCC patients to predict the prognostic risk. John Wiley and Sons Inc. 2020-05-30 /pmc/articles/PMC7521318/ /pubmed/32474975 http://dx.doi.org/10.1002/jcla.23377 Text en © 2020 The Authors. Journal of Clinical Laboratory Analysis published by Wiley Periodicals LLC. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Jiang, Haitao
Zhao, Lianhe
Chen, Yunjie
Sun, Liang
A four‐long noncoding RNA signature predicts survival of hepatocellular carcinoma patients
title A four‐long noncoding RNA signature predicts survival of hepatocellular carcinoma patients
title_full A four‐long noncoding RNA signature predicts survival of hepatocellular carcinoma patients
title_fullStr A four‐long noncoding RNA signature predicts survival of hepatocellular carcinoma patients
title_full_unstemmed A four‐long noncoding RNA signature predicts survival of hepatocellular carcinoma patients
title_short A four‐long noncoding RNA signature predicts survival of hepatocellular carcinoma patients
title_sort four‐long noncoding rna signature predicts survival of hepatocellular carcinoma patients
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7521318/
https://www.ncbi.nlm.nih.gov/pubmed/32474975
http://dx.doi.org/10.1002/jcla.23377
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