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Establishment of multifactor predictive models for the occurrence and progression of cervical intraepithelial neoplasia
BACKGROUND: To study the risk factors involved in the occurrence and progression of cervical intraepithelial neoplasia (CIN) and to establish predictive models. METHODS: Genemania was used to build a gene network. Then, the core gene-related pathways associated with the occurrence and progression of...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7523359/ https://www.ncbi.nlm.nih.gov/pubmed/32993576 http://dx.doi.org/10.1186/s12885-020-07265-7 |
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author | Chen, Mengjie Wang, He Liang, Yuejuan Hu, Mingmiao Li, Li |
author_facet | Chen, Mengjie Wang, He Liang, Yuejuan Hu, Mingmiao Li, Li |
author_sort | Chen, Mengjie |
collection | PubMed |
description | BACKGROUND: To study the risk factors involved in the occurrence and progression of cervical intraepithelial neoplasia (CIN) and to establish predictive models. METHODS: Genemania was used to build a gene network. Then, the core gene-related pathways associated with the occurrence and progression of CIN were screened in the Kyoto Encyclopedia of Genes and Genomes (KEGG) database. Real-time fluorescence quantitative polymerase chain reaction (RT-qPCR) experiments were performed to verify the differential expression of the identified genes in different tissues. R language was used for predictive model establishment. RESULTS: A total of 10 genes were investigated in this study. A total of 30 cases of cervical squamous cell cancer (SCC), 52 cases of CIN and 38 cases of normal cervix were enrolled. Compared to CIN cases, the age of patients in the SCC group was older, the number of parities was greater, and the percentage of patients diagnosed with CINII+ by TCT was higher. The expression of TGFBR2, CSKN1A1, PRKCI and CTBP2 was significantly higher in the SCC groups. Compared to patients with normal cervix tissue, the percentage of patients who were HPV positive and were diagnosed with CINII+ by TCT was significantly higher. FOXO1 expression was significantly higher in CIN tissue, but TGFBR2 and CTBP2 expression was significantly lower in CIN tissue. The significantly different genes and clinical factors were included in the models. CONCLUSIONS: Combination of clinical and significant genes to establish the random forest models can provide references to predict the occurrence and progression of CIN. |
format | Online Article Text |
id | pubmed-7523359 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-75233592020-09-30 Establishment of multifactor predictive models for the occurrence and progression of cervical intraepithelial neoplasia Chen, Mengjie Wang, He Liang, Yuejuan Hu, Mingmiao Li, Li BMC Cancer Research Article BACKGROUND: To study the risk factors involved in the occurrence and progression of cervical intraepithelial neoplasia (CIN) and to establish predictive models. METHODS: Genemania was used to build a gene network. Then, the core gene-related pathways associated with the occurrence and progression of CIN were screened in the Kyoto Encyclopedia of Genes and Genomes (KEGG) database. Real-time fluorescence quantitative polymerase chain reaction (RT-qPCR) experiments were performed to verify the differential expression of the identified genes in different tissues. R language was used for predictive model establishment. RESULTS: A total of 10 genes were investigated in this study. A total of 30 cases of cervical squamous cell cancer (SCC), 52 cases of CIN and 38 cases of normal cervix were enrolled. Compared to CIN cases, the age of patients in the SCC group was older, the number of parities was greater, and the percentage of patients diagnosed with CINII+ by TCT was higher. The expression of TGFBR2, CSKN1A1, PRKCI and CTBP2 was significantly higher in the SCC groups. Compared to patients with normal cervix tissue, the percentage of patients who were HPV positive and were diagnosed with CINII+ by TCT was significantly higher. FOXO1 expression was significantly higher in CIN tissue, but TGFBR2 and CTBP2 expression was significantly lower in CIN tissue. The significantly different genes and clinical factors were included in the models. CONCLUSIONS: Combination of clinical and significant genes to establish the random forest models can provide references to predict the occurrence and progression of CIN. BioMed Central 2020-09-29 /pmc/articles/PMC7523359/ /pubmed/32993576 http://dx.doi.org/10.1186/s12885-020-07265-7 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Article Chen, Mengjie Wang, He Liang, Yuejuan Hu, Mingmiao Li, Li Establishment of multifactor predictive models for the occurrence and progression of cervical intraepithelial neoplasia |
title | Establishment of multifactor predictive models for the occurrence and progression of cervical intraepithelial neoplasia |
title_full | Establishment of multifactor predictive models for the occurrence and progression of cervical intraepithelial neoplasia |
title_fullStr | Establishment of multifactor predictive models for the occurrence and progression of cervical intraepithelial neoplasia |
title_full_unstemmed | Establishment of multifactor predictive models for the occurrence and progression of cervical intraepithelial neoplasia |
title_short | Establishment of multifactor predictive models for the occurrence and progression of cervical intraepithelial neoplasia |
title_sort | establishment of multifactor predictive models for the occurrence and progression of cervical intraepithelial neoplasia |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7523359/ https://www.ncbi.nlm.nih.gov/pubmed/32993576 http://dx.doi.org/10.1186/s12885-020-07265-7 |
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