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An extensible big data software architecture managing a research resource of real-world clinical radiology data linked to other health data from the whole Scottish population
AIM: To enable a world-leading research dataset of routinely collected clinical images linked to other routinely collected data from the whole Scottish national population. This includes more than 30 million different radiological examinations from a population of 5.4 million and >2 PB of data co...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7523405/ https://www.ncbi.nlm.nih.gov/pubmed/32990744 http://dx.doi.org/10.1093/gigascience/giaa095 |
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author | Nind, Thomas Sutherland, James McAllister, Gordon Hardy, Douglas Hume, Ally MacLeod, Ruairidh Caldwell, Jacqueline Krueger, Susan Tramma, Leandro Teviotdale, Ross Abdelatif, Mohammed Gillen, Kenny Ward, Joe Scobbie, Donald Baillie, Ian Brooks, Andrew Prodan, Bianca Kerr, William Sloan-Murphy, Dominic Herrera, Juan F R McManus, Dan Morris, Carole Sinclair, Carol Baxter, Rob Parsons, Mark Morris, Andrew Jefferson, Emily |
author_facet | Nind, Thomas Sutherland, James McAllister, Gordon Hardy, Douglas Hume, Ally MacLeod, Ruairidh Caldwell, Jacqueline Krueger, Susan Tramma, Leandro Teviotdale, Ross Abdelatif, Mohammed Gillen, Kenny Ward, Joe Scobbie, Donald Baillie, Ian Brooks, Andrew Prodan, Bianca Kerr, William Sloan-Murphy, Dominic Herrera, Juan F R McManus, Dan Morris, Carole Sinclair, Carol Baxter, Rob Parsons, Mark Morris, Andrew Jefferson, Emily |
author_sort | Nind, Thomas |
collection | PubMed |
description | AIM: To enable a world-leading research dataset of routinely collected clinical images linked to other routinely collected data from the whole Scottish national population. This includes more than 30 million different radiological examinations from a population of 5.4 million and >2 PB of data collected since 2010. METHODS: Scotland has a central archive of radiological data used to directly provide clinical care to patients. We have developed an architecture and platform to securely extract a copy of those data, link it to other clinical or social datasets, remove personal data to protect privacy, and make the resulting data available to researchers in a controlled Safe Haven environment. RESULTS: An extensive software platform has been developed to host, extract, and link data from cohorts to answer research questions. The platform has been tested on 5 different test cases and is currently being further enhanced to support 3 exemplar research projects. CONCLUSIONS: The data available are from a range of radiological modalities and scanner types and were collected under different environmental conditions. These real-world, heterogenous data are valuable for training algorithms to support clinical decision making, especially for deep learning where large data volumes are required. The resource is now available for international research access. The platform and data can support new health research using artificial intelligence and machine learning technologies, as well as enabling discovery science. |
format | Online Article Text |
id | pubmed-7523405 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-75234052020-10-02 An extensible big data software architecture managing a research resource of real-world clinical radiology data linked to other health data from the whole Scottish population Nind, Thomas Sutherland, James McAllister, Gordon Hardy, Douglas Hume, Ally MacLeod, Ruairidh Caldwell, Jacqueline Krueger, Susan Tramma, Leandro Teviotdale, Ross Abdelatif, Mohammed Gillen, Kenny Ward, Joe Scobbie, Donald Baillie, Ian Brooks, Andrew Prodan, Bianca Kerr, William Sloan-Murphy, Dominic Herrera, Juan F R McManus, Dan Morris, Carole Sinclair, Carol Baxter, Rob Parsons, Mark Morris, Andrew Jefferson, Emily Gigascience Technical Note AIM: To enable a world-leading research dataset of routinely collected clinical images linked to other routinely collected data from the whole Scottish national population. This includes more than 30 million different radiological examinations from a population of 5.4 million and >2 PB of data collected since 2010. METHODS: Scotland has a central archive of radiological data used to directly provide clinical care to patients. We have developed an architecture and platform to securely extract a copy of those data, link it to other clinical or social datasets, remove personal data to protect privacy, and make the resulting data available to researchers in a controlled Safe Haven environment. RESULTS: An extensive software platform has been developed to host, extract, and link data from cohorts to answer research questions. The platform has been tested on 5 different test cases and is currently being further enhanced to support 3 exemplar research projects. CONCLUSIONS: The data available are from a range of radiological modalities and scanner types and were collected under different environmental conditions. These real-world, heterogenous data are valuable for training algorithms to support clinical decision making, especially for deep learning where large data volumes are required. The resource is now available for international research access. The platform and data can support new health research using artificial intelligence and machine learning technologies, as well as enabling discovery science. Oxford University Press 2020-09-29 /pmc/articles/PMC7523405/ /pubmed/32990744 http://dx.doi.org/10.1093/gigascience/giaa095 Text en © The Author(s) 2020. Published by Oxford University Press GigaScience. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Technical Note Nind, Thomas Sutherland, James McAllister, Gordon Hardy, Douglas Hume, Ally MacLeod, Ruairidh Caldwell, Jacqueline Krueger, Susan Tramma, Leandro Teviotdale, Ross Abdelatif, Mohammed Gillen, Kenny Ward, Joe Scobbie, Donald Baillie, Ian Brooks, Andrew Prodan, Bianca Kerr, William Sloan-Murphy, Dominic Herrera, Juan F R McManus, Dan Morris, Carole Sinclair, Carol Baxter, Rob Parsons, Mark Morris, Andrew Jefferson, Emily An extensible big data software architecture managing a research resource of real-world clinical radiology data linked to other health data from the whole Scottish population |
title | An extensible big data software architecture managing a research resource of real-world clinical radiology data linked to other health data from the whole Scottish population |
title_full | An extensible big data software architecture managing a research resource of real-world clinical radiology data linked to other health data from the whole Scottish population |
title_fullStr | An extensible big data software architecture managing a research resource of real-world clinical radiology data linked to other health data from the whole Scottish population |
title_full_unstemmed | An extensible big data software architecture managing a research resource of real-world clinical radiology data linked to other health data from the whole Scottish population |
title_short | An extensible big data software architecture managing a research resource of real-world clinical radiology data linked to other health data from the whole Scottish population |
title_sort | extensible big data software architecture managing a research resource of real-world clinical radiology data linked to other health data from the whole scottish population |
topic | Technical Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7523405/ https://www.ncbi.nlm.nih.gov/pubmed/32990744 http://dx.doi.org/10.1093/gigascience/giaa095 |
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