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An extensible big data software architecture managing a research resource of real-world clinical radiology data linked to other health data from the whole Scottish population

AIM: To enable a world-leading research dataset of routinely collected clinical images linked to other routinely collected data from the whole Scottish national population. This includes more than 30 million different radiological examinations from a population of 5.4 million and >2 PB of data co...

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Autores principales: Nind, Thomas, Sutherland, James, McAllister, Gordon, Hardy, Douglas, Hume, Ally, MacLeod, Ruairidh, Caldwell, Jacqueline, Krueger, Susan, Tramma, Leandro, Teviotdale, Ross, Abdelatif, Mohammed, Gillen, Kenny, Ward, Joe, Scobbie, Donald, Baillie, Ian, Brooks, Andrew, Prodan, Bianca, Kerr, William, Sloan-Murphy, Dominic, Herrera, Juan F R, McManus, Dan, Morris, Carole, Sinclair, Carol, Baxter, Rob, Parsons, Mark, Morris, Andrew, Jefferson, Emily
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7523405/
https://www.ncbi.nlm.nih.gov/pubmed/32990744
http://dx.doi.org/10.1093/gigascience/giaa095
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author Nind, Thomas
Sutherland, James
McAllister, Gordon
Hardy, Douglas
Hume, Ally
MacLeod, Ruairidh
Caldwell, Jacqueline
Krueger, Susan
Tramma, Leandro
Teviotdale, Ross
Abdelatif, Mohammed
Gillen, Kenny
Ward, Joe
Scobbie, Donald
Baillie, Ian
Brooks, Andrew
Prodan, Bianca
Kerr, William
Sloan-Murphy, Dominic
Herrera, Juan F R
McManus, Dan
Morris, Carole
Sinclair, Carol
Baxter, Rob
Parsons, Mark
Morris, Andrew
Jefferson, Emily
author_facet Nind, Thomas
Sutherland, James
McAllister, Gordon
Hardy, Douglas
Hume, Ally
MacLeod, Ruairidh
Caldwell, Jacqueline
Krueger, Susan
Tramma, Leandro
Teviotdale, Ross
Abdelatif, Mohammed
Gillen, Kenny
Ward, Joe
Scobbie, Donald
Baillie, Ian
Brooks, Andrew
Prodan, Bianca
Kerr, William
Sloan-Murphy, Dominic
Herrera, Juan F R
McManus, Dan
Morris, Carole
Sinclair, Carol
Baxter, Rob
Parsons, Mark
Morris, Andrew
Jefferson, Emily
author_sort Nind, Thomas
collection PubMed
description AIM: To enable a world-leading research dataset of routinely collected clinical images linked to other routinely collected data from the whole Scottish national population. This includes more than 30 million different radiological examinations from a population of 5.4 million and >2 PB of data collected since 2010. METHODS: Scotland has a central archive of radiological data used to directly provide clinical care to patients. We have developed an architecture and platform to securely extract a copy of those data, link it to other clinical or social datasets, remove personal data to protect privacy, and make the resulting data available to researchers in a controlled Safe Haven environment. RESULTS: An extensive software platform has been developed to host, extract, and link data from cohorts to answer research questions. The platform has been tested on 5 different test cases and is currently being further enhanced to support 3 exemplar research projects. CONCLUSIONS: The data available are from a range of radiological modalities and scanner types and were collected under different environmental conditions. These real-world, heterogenous data are valuable for training algorithms to support clinical decision making, especially for deep learning where large data volumes are required. The resource is now available for international research access. The platform and data can support new health research using artificial intelligence and machine learning technologies, as well as enabling discovery science.
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spelling pubmed-75234052020-10-02 An extensible big data software architecture managing a research resource of real-world clinical radiology data linked to other health data from the whole Scottish population Nind, Thomas Sutherland, James McAllister, Gordon Hardy, Douglas Hume, Ally MacLeod, Ruairidh Caldwell, Jacqueline Krueger, Susan Tramma, Leandro Teviotdale, Ross Abdelatif, Mohammed Gillen, Kenny Ward, Joe Scobbie, Donald Baillie, Ian Brooks, Andrew Prodan, Bianca Kerr, William Sloan-Murphy, Dominic Herrera, Juan F R McManus, Dan Morris, Carole Sinclair, Carol Baxter, Rob Parsons, Mark Morris, Andrew Jefferson, Emily Gigascience Technical Note AIM: To enable a world-leading research dataset of routinely collected clinical images linked to other routinely collected data from the whole Scottish national population. This includes more than 30 million different radiological examinations from a population of 5.4 million and >2 PB of data collected since 2010. METHODS: Scotland has a central archive of radiological data used to directly provide clinical care to patients. We have developed an architecture and platform to securely extract a copy of those data, link it to other clinical or social datasets, remove personal data to protect privacy, and make the resulting data available to researchers in a controlled Safe Haven environment. RESULTS: An extensive software platform has been developed to host, extract, and link data from cohorts to answer research questions. The platform has been tested on 5 different test cases and is currently being further enhanced to support 3 exemplar research projects. CONCLUSIONS: The data available are from a range of radiological modalities and scanner types and were collected under different environmental conditions. These real-world, heterogenous data are valuable for training algorithms to support clinical decision making, especially for deep learning where large data volumes are required. The resource is now available for international research access. The platform and data can support new health research using artificial intelligence and machine learning technologies, as well as enabling discovery science. Oxford University Press 2020-09-29 /pmc/articles/PMC7523405/ /pubmed/32990744 http://dx.doi.org/10.1093/gigascience/giaa095 Text en © The Author(s) 2020. Published by Oxford University Press GigaScience. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Technical Note
Nind, Thomas
Sutherland, James
McAllister, Gordon
Hardy, Douglas
Hume, Ally
MacLeod, Ruairidh
Caldwell, Jacqueline
Krueger, Susan
Tramma, Leandro
Teviotdale, Ross
Abdelatif, Mohammed
Gillen, Kenny
Ward, Joe
Scobbie, Donald
Baillie, Ian
Brooks, Andrew
Prodan, Bianca
Kerr, William
Sloan-Murphy, Dominic
Herrera, Juan F R
McManus, Dan
Morris, Carole
Sinclair, Carol
Baxter, Rob
Parsons, Mark
Morris, Andrew
Jefferson, Emily
An extensible big data software architecture managing a research resource of real-world clinical radiology data linked to other health data from the whole Scottish population
title An extensible big data software architecture managing a research resource of real-world clinical radiology data linked to other health data from the whole Scottish population
title_full An extensible big data software architecture managing a research resource of real-world clinical radiology data linked to other health data from the whole Scottish population
title_fullStr An extensible big data software architecture managing a research resource of real-world clinical radiology data linked to other health data from the whole Scottish population
title_full_unstemmed An extensible big data software architecture managing a research resource of real-world clinical radiology data linked to other health data from the whole Scottish population
title_short An extensible big data software architecture managing a research resource of real-world clinical radiology data linked to other health data from the whole Scottish population
title_sort extensible big data software architecture managing a research resource of real-world clinical radiology data linked to other health data from the whole scottish population
topic Technical Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7523405/
https://www.ncbi.nlm.nih.gov/pubmed/32990744
http://dx.doi.org/10.1093/gigascience/giaa095
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