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Automatic Identification of First-Order Veins and Corolla Contours in Three-Dimensional Floral Images

Defining and quantifying corolla traits are essential for studying corolla shape variation. Three-dimensional (3D) images of corollas contain comprehensive information regarding corolla structures and are optimal for studying corolla shapes. Conventionally, corolla traits are identified and quantifi...

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Autores principales: Wang, Yi-Hsiang, Hsu, Hao-Chun, Chou, Wen-Chieh, Liang, Chia-Hao, Kuo, Yan-Fu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7525071/
https://www.ncbi.nlm.nih.gov/pubmed/33042177
http://dx.doi.org/10.3389/fpls.2020.549699
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author Wang, Yi-Hsiang
Hsu, Hao-Chun
Chou, Wen-Chieh
Liang, Chia-Hao
Kuo, Yan-Fu
author_facet Wang, Yi-Hsiang
Hsu, Hao-Chun
Chou, Wen-Chieh
Liang, Chia-Hao
Kuo, Yan-Fu
author_sort Wang, Yi-Hsiang
collection PubMed
description Defining and quantifying corolla traits are essential for studying corolla shape variation. Three-dimensional (3D) images of corollas contain comprehensive information regarding corolla structures and are optimal for studying corolla shapes. Conventionally, corolla traits are identified and quantified manually from 3D images. Manual identification is time consuming and labor intensive. In this study, approaches are proposed to automatically identify first-order veins and corolla contours in 3D corolla images. The first-order veins of the corollas were identified using Hessian of Gaussian and Dijkstra’s algorithm. The contours of the corollas were identified using vector harmony and node distance thresholding. A total of 130 3D images of 28 species in the subtribe Ligeriinae were collected and used to test the proposed approaches. The successful detection rate reached 86.54%. Two derived traits, contour–vein ratio and corolla angle, were defined and quantified using the first-order veins and corolla contour results to investigate the relationship between corolla shapes and pollination types of the subtribe Ligeriinae. Analyses revealed that the mean corolla contour, mean absolute corolla angle, and mean contour–vein ratio of the ornithophilic species were significantly smaller compared with the other species. The mean corolla contour, mean corolla angle, and mean contour–vein ratio of the melittophilic species were significantly larger compared with those of the ornithophilic species. The proposed method was also applied to certain Gesneriaceae species in the subtribes Gloxiniinae, Streptocarpinae, and Didymocarpinae. The results revealed that the method could be applied to most fresh sympetalous flowers for identifying first-order veins and corolla contours.
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spelling pubmed-75250712020-10-09 Automatic Identification of First-Order Veins and Corolla Contours in Three-Dimensional Floral Images Wang, Yi-Hsiang Hsu, Hao-Chun Chou, Wen-Chieh Liang, Chia-Hao Kuo, Yan-Fu Front Plant Sci Plant Science Defining and quantifying corolla traits are essential for studying corolla shape variation. Three-dimensional (3D) images of corollas contain comprehensive information regarding corolla structures and are optimal for studying corolla shapes. Conventionally, corolla traits are identified and quantified manually from 3D images. Manual identification is time consuming and labor intensive. In this study, approaches are proposed to automatically identify first-order veins and corolla contours in 3D corolla images. The first-order veins of the corollas were identified using Hessian of Gaussian and Dijkstra’s algorithm. The contours of the corollas were identified using vector harmony and node distance thresholding. A total of 130 3D images of 28 species in the subtribe Ligeriinae were collected and used to test the proposed approaches. The successful detection rate reached 86.54%. Two derived traits, contour–vein ratio and corolla angle, were defined and quantified using the first-order veins and corolla contour results to investigate the relationship between corolla shapes and pollination types of the subtribe Ligeriinae. Analyses revealed that the mean corolla contour, mean absolute corolla angle, and mean contour–vein ratio of the ornithophilic species were significantly smaller compared with the other species. The mean corolla contour, mean corolla angle, and mean contour–vein ratio of the melittophilic species were significantly larger compared with those of the ornithophilic species. The proposed method was also applied to certain Gesneriaceae species in the subtribes Gloxiniinae, Streptocarpinae, and Didymocarpinae. The results revealed that the method could be applied to most fresh sympetalous flowers for identifying first-order veins and corolla contours. Frontiers Media S.A. 2020-09-16 /pmc/articles/PMC7525071/ /pubmed/33042177 http://dx.doi.org/10.3389/fpls.2020.549699 Text en Copyright © 2020 Wang, Hsu, Chou, Liang and Kuo http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Wang, Yi-Hsiang
Hsu, Hao-Chun
Chou, Wen-Chieh
Liang, Chia-Hao
Kuo, Yan-Fu
Automatic Identification of First-Order Veins and Corolla Contours in Three-Dimensional Floral Images
title Automatic Identification of First-Order Veins and Corolla Contours in Three-Dimensional Floral Images
title_full Automatic Identification of First-Order Veins and Corolla Contours in Three-Dimensional Floral Images
title_fullStr Automatic Identification of First-Order Veins and Corolla Contours in Three-Dimensional Floral Images
title_full_unstemmed Automatic Identification of First-Order Veins and Corolla Contours in Three-Dimensional Floral Images
title_short Automatic Identification of First-Order Veins and Corolla Contours in Three-Dimensional Floral Images
title_sort automatic identification of first-order veins and corolla contours in three-dimensional floral images
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7525071/
https://www.ncbi.nlm.nih.gov/pubmed/33042177
http://dx.doi.org/10.3389/fpls.2020.549699
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