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Predicting complete cytoreduction for advanced ovarian cancer patients using nearest-neighbor models

BACKGROUND: The foundation of modern ovarian cancer care is cytoreductive surgery to remove all macroscopic disease (R0). Identification of R0 resection patients may help individualise treatment. Machine learning and AI have been shown to be effective systems for classification and prediction. For a...

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Autores principales: Laios, Alexandros, Gryparis, Alexandros, DeJong, Diederick, Hutson, Richard, Theophilou, Georgios, Leach, Chris
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7526140/
https://www.ncbi.nlm.nih.gov/pubmed/32993745
http://dx.doi.org/10.1186/s13048-020-00700-0
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author Laios, Alexandros
Gryparis, Alexandros
DeJong, Diederick
Hutson, Richard
Theophilou, Georgios
Leach, Chris
author_facet Laios, Alexandros
Gryparis, Alexandros
DeJong, Diederick
Hutson, Richard
Theophilou, Georgios
Leach, Chris
author_sort Laios, Alexandros
collection PubMed
description BACKGROUND: The foundation of modern ovarian cancer care is cytoreductive surgery to remove all macroscopic disease (R0). Identification of R0 resection patients may help individualise treatment. Machine learning and AI have been shown to be effective systems for classification and prediction. For a disease as heterogenous as ovarian cancer, they could potentially outperform conventional predictive algorithms for routine clinical use. We investigated the performance of an AI system, the k-nearest neighbor (k-NN) classifier, to predict R0, comparing it with logistic regression. Patients diagnosed with advanced stage, high grade serous ovarian, tubal and primary peritoneal cancer, undergoing surgical cytoreduction from 2015 to 2019, was selected from the ovarian database. Performance variables included age, BMI, Charlson Comorbidity Index, timing of surgery, surgical complexity and disease score. The k-NN algorithm classified R0 vs non-R0 patients using 3–20 nearest neighbors. Prediction accuracy was estimated as percentage of observations in the training set correctly classified. RESULTS: 154 patients were identified, with mean age of 64.4 + 10.5 yrs., BMI of 27.2 + 5.8 and mean SCS of 3 + 1 (1–8). Complete and optimal cytoreduction was achieved in 62 and 88% patients. The mean predictive accuracy was 66%. R0 resection prediction of true negatives was as high as 90% using k = 20 neighbors. CONCLUSIONS: The k-NN algorithm is a promising and versatile tool for R0 resection prediction. It slightly outperforms logistic regression and is expected to improve accuracy with data expansion.
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spelling pubmed-75261402020-09-30 Predicting complete cytoreduction for advanced ovarian cancer patients using nearest-neighbor models Laios, Alexandros Gryparis, Alexandros DeJong, Diederick Hutson, Richard Theophilou, Georgios Leach, Chris J Ovarian Res Research BACKGROUND: The foundation of modern ovarian cancer care is cytoreductive surgery to remove all macroscopic disease (R0). Identification of R0 resection patients may help individualise treatment. Machine learning and AI have been shown to be effective systems for classification and prediction. For a disease as heterogenous as ovarian cancer, they could potentially outperform conventional predictive algorithms for routine clinical use. We investigated the performance of an AI system, the k-nearest neighbor (k-NN) classifier, to predict R0, comparing it with logistic regression. Patients diagnosed with advanced stage, high grade serous ovarian, tubal and primary peritoneal cancer, undergoing surgical cytoreduction from 2015 to 2019, was selected from the ovarian database. Performance variables included age, BMI, Charlson Comorbidity Index, timing of surgery, surgical complexity and disease score. The k-NN algorithm classified R0 vs non-R0 patients using 3–20 nearest neighbors. Prediction accuracy was estimated as percentage of observations in the training set correctly classified. RESULTS: 154 patients were identified, with mean age of 64.4 + 10.5 yrs., BMI of 27.2 + 5.8 and mean SCS of 3 + 1 (1–8). Complete and optimal cytoreduction was achieved in 62 and 88% patients. The mean predictive accuracy was 66%. R0 resection prediction of true negatives was as high as 90% using k = 20 neighbors. CONCLUSIONS: The k-NN algorithm is a promising and versatile tool for R0 resection prediction. It slightly outperforms logistic regression and is expected to improve accuracy with data expansion. BioMed Central 2020-09-29 /pmc/articles/PMC7526140/ /pubmed/32993745 http://dx.doi.org/10.1186/s13048-020-00700-0 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Laios, Alexandros
Gryparis, Alexandros
DeJong, Diederick
Hutson, Richard
Theophilou, Georgios
Leach, Chris
Predicting complete cytoreduction for advanced ovarian cancer patients using nearest-neighbor models
title Predicting complete cytoreduction for advanced ovarian cancer patients using nearest-neighbor models
title_full Predicting complete cytoreduction for advanced ovarian cancer patients using nearest-neighbor models
title_fullStr Predicting complete cytoreduction for advanced ovarian cancer patients using nearest-neighbor models
title_full_unstemmed Predicting complete cytoreduction for advanced ovarian cancer patients using nearest-neighbor models
title_short Predicting complete cytoreduction for advanced ovarian cancer patients using nearest-neighbor models
title_sort predicting complete cytoreduction for advanced ovarian cancer patients using nearest-neighbor models
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7526140/
https://www.ncbi.nlm.nih.gov/pubmed/32993745
http://dx.doi.org/10.1186/s13048-020-00700-0
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