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Selection for feed efficiency using the social effects animal model in growing Duroc pigs: evaluation by simulation

BACKGROUND: Traits recorded on animals that are raised in groups can be analysed with the social effects animal model (SAM). For multiple traits, this model specifies the genetic correlation structure more completely than the animal model (AM). Our hypothesis was that by using the SAM for genetic ev...

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Autores principales: Herrera-Cáceres, William, Sánchez, Juan Pablo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7526410/
https://www.ncbi.nlm.nih.gov/pubmed/32993480
http://dx.doi.org/10.1186/s12711-020-00572-4
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author Herrera-Cáceres, William
Sánchez, Juan Pablo
author_facet Herrera-Cáceres, William
Sánchez, Juan Pablo
author_sort Herrera-Cáceres, William
collection PubMed
description BACKGROUND: Traits recorded on animals that are raised in groups can be analysed with the social effects animal model (SAM). For multiple traits, this model specifies the genetic correlation structure more completely than the animal model (AM). Our hypothesis was that by using the SAM for genetic evaluation of average daily gain (ADG) and backfat thickness (BF), a high rate of improvement in feed conversion ratio (FCR) might be achieved, since unfavourable genetic correlations between ADG and BF reported in a Duroc pig line could be partially avoided. We estimated genetic and non-genetic correlations between BF, ADG and FCR on 1144 pigs using Bayesian methods considering the SAM; and responses to selection indexes that combine estimates of indirect (IGE) and direct (DGE) genetic effects for ADG and BF by stochastic simulation. RESULTS: Estimates of the ratio of the variance of DGE to the phenotypic variance were 0.31, 0.39 and 0.25 and those of the total genetic variance to the phenotypic variance were 0.63, 0.74 and 0.93 for ADG, BF and FCR, respectively. In spite of this, when the SAM was used to generate data and for the genetic evaluations, the average economic response was worse than that obtained when BV predictions from the AM were considered. The achieved economic response was due to a direct reduction in BF and not to an improvement in FCR. CONCLUSIONS: Our results show that although social genetic effects play an important role in the traits studied, their proper consideration in pig breeding programs to improve FCR indirectly is still difficult. The correlations between IGE and DGE that could help to overcome the unfavourable genetic correlations between DGE did not reach sufficiently high magnitudes; also, the genetic parameters estimates from the SAM have large errors. These two factors penalize the average response under the SAM compared to the AM.
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spelling pubmed-75264102020-10-01 Selection for feed efficiency using the social effects animal model in growing Duroc pigs: evaluation by simulation Herrera-Cáceres, William Sánchez, Juan Pablo Genet Sel Evol Research Article BACKGROUND: Traits recorded on animals that are raised in groups can be analysed with the social effects animal model (SAM). For multiple traits, this model specifies the genetic correlation structure more completely than the animal model (AM). Our hypothesis was that by using the SAM for genetic evaluation of average daily gain (ADG) and backfat thickness (BF), a high rate of improvement in feed conversion ratio (FCR) might be achieved, since unfavourable genetic correlations between ADG and BF reported in a Duroc pig line could be partially avoided. We estimated genetic and non-genetic correlations between BF, ADG and FCR on 1144 pigs using Bayesian methods considering the SAM; and responses to selection indexes that combine estimates of indirect (IGE) and direct (DGE) genetic effects for ADG and BF by stochastic simulation. RESULTS: Estimates of the ratio of the variance of DGE to the phenotypic variance were 0.31, 0.39 and 0.25 and those of the total genetic variance to the phenotypic variance were 0.63, 0.74 and 0.93 for ADG, BF and FCR, respectively. In spite of this, when the SAM was used to generate data and for the genetic evaluations, the average economic response was worse than that obtained when BV predictions from the AM were considered. The achieved economic response was due to a direct reduction in BF and not to an improvement in FCR. CONCLUSIONS: Our results show that although social genetic effects play an important role in the traits studied, their proper consideration in pig breeding programs to improve FCR indirectly is still difficult. The correlations between IGE and DGE that could help to overcome the unfavourable genetic correlations between DGE did not reach sufficiently high magnitudes; also, the genetic parameters estimates from the SAM have large errors. These two factors penalize the average response under the SAM compared to the AM. BioMed Central 2020-09-29 /pmc/articles/PMC7526410/ /pubmed/32993480 http://dx.doi.org/10.1186/s12711-020-00572-4 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Article
Herrera-Cáceres, William
Sánchez, Juan Pablo
Selection for feed efficiency using the social effects animal model in growing Duroc pigs: evaluation by simulation
title Selection for feed efficiency using the social effects animal model in growing Duroc pigs: evaluation by simulation
title_full Selection for feed efficiency using the social effects animal model in growing Duroc pigs: evaluation by simulation
title_fullStr Selection for feed efficiency using the social effects animal model in growing Duroc pigs: evaluation by simulation
title_full_unstemmed Selection for feed efficiency using the social effects animal model in growing Duroc pigs: evaluation by simulation
title_short Selection for feed efficiency using the social effects animal model in growing Duroc pigs: evaluation by simulation
title_sort selection for feed efficiency using the social effects animal model in growing duroc pigs: evaluation by simulation
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7526410/
https://www.ncbi.nlm.nih.gov/pubmed/32993480
http://dx.doi.org/10.1186/s12711-020-00572-4
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