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Deep learning-based reduced order models in cardiac electrophysiology

Predicting the electrical behavior of the heart, from the cellular scale to the tissue level, relies on the numerical approximation of coupled nonlinear dynamical systems. These systems describe the cardiac action potential, that is the polarization/depolarization cycle occurring at every heart beat...

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Detalles Bibliográficos
Autores principales: Fresca, Stefania, Manzoni, Andrea, Dedè, Luca, Quarteroni, Alfio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7529269/
https://www.ncbi.nlm.nih.gov/pubmed/33002014
http://dx.doi.org/10.1371/journal.pone.0239416
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author Fresca, Stefania
Manzoni, Andrea
Dedè, Luca
Quarteroni, Alfio
author_facet Fresca, Stefania
Manzoni, Andrea
Dedè, Luca
Quarteroni, Alfio
author_sort Fresca, Stefania
collection PubMed
description Predicting the electrical behavior of the heart, from the cellular scale to the tissue level, relies on the numerical approximation of coupled nonlinear dynamical systems. These systems describe the cardiac action potential, that is the polarization/depolarization cycle occurring at every heart beat that models the time evolution of the electrical potential across the cell membrane, as well as a set of ionic variables. Multiple solutions of these systems, corresponding to different model inputs, are required to evaluate outputs of clinical interest, such as activation maps and action potential duration. More importantly, these models feature coherent structures that propagate over time, such as wavefronts. These systems can hardly be reduced to lower dimensional problems by conventional reduced order models (ROMs) such as, e.g., the reduced basis method. This is primarily due to the low regularity of the solution manifold (with respect to the problem parameters), as well as to the nonlinear nature of the input-output maps that we intend to reconstruct numerically. To overcome this difficulty, in this paper we propose a new, nonlinear approach relying on deep learning (DL) algorithms—such as deep feedforward neural networks and convolutional autoencoders—to obtain accurate and efficient ROMs, whose dimensionality matches the number of system parameters. We show that the proposed DL-ROM framework can efficiently provide solutions to parametrized electrophysiology problems, thus enabling multi-scenario analysis in pathological cases. We investigate four challenging test cases in cardiac electrophysiology, thus demonstrating that DL-ROM outperforms classical projection-based ROMs.
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spelling pubmed-75292692020-10-02 Deep learning-based reduced order models in cardiac electrophysiology Fresca, Stefania Manzoni, Andrea Dedè, Luca Quarteroni, Alfio PLoS One Research Article Predicting the electrical behavior of the heart, from the cellular scale to the tissue level, relies on the numerical approximation of coupled nonlinear dynamical systems. These systems describe the cardiac action potential, that is the polarization/depolarization cycle occurring at every heart beat that models the time evolution of the electrical potential across the cell membrane, as well as a set of ionic variables. Multiple solutions of these systems, corresponding to different model inputs, are required to evaluate outputs of clinical interest, such as activation maps and action potential duration. More importantly, these models feature coherent structures that propagate over time, such as wavefronts. These systems can hardly be reduced to lower dimensional problems by conventional reduced order models (ROMs) such as, e.g., the reduced basis method. This is primarily due to the low regularity of the solution manifold (with respect to the problem parameters), as well as to the nonlinear nature of the input-output maps that we intend to reconstruct numerically. To overcome this difficulty, in this paper we propose a new, nonlinear approach relying on deep learning (DL) algorithms—such as deep feedforward neural networks and convolutional autoencoders—to obtain accurate and efficient ROMs, whose dimensionality matches the number of system parameters. We show that the proposed DL-ROM framework can efficiently provide solutions to parametrized electrophysiology problems, thus enabling multi-scenario analysis in pathological cases. We investigate four challenging test cases in cardiac electrophysiology, thus demonstrating that DL-ROM outperforms classical projection-based ROMs. Public Library of Science 2020-10-01 /pmc/articles/PMC7529269/ /pubmed/33002014 http://dx.doi.org/10.1371/journal.pone.0239416 Text en © 2020 Fresca et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Fresca, Stefania
Manzoni, Andrea
Dedè, Luca
Quarteroni, Alfio
Deep learning-based reduced order models in cardiac electrophysiology
title Deep learning-based reduced order models in cardiac electrophysiology
title_full Deep learning-based reduced order models in cardiac electrophysiology
title_fullStr Deep learning-based reduced order models in cardiac electrophysiology
title_full_unstemmed Deep learning-based reduced order models in cardiac electrophysiology
title_short Deep learning-based reduced order models in cardiac electrophysiology
title_sort deep learning-based reduced order models in cardiac electrophysiology
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7529269/
https://www.ncbi.nlm.nih.gov/pubmed/33002014
http://dx.doi.org/10.1371/journal.pone.0239416
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