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Multi-omics prediction of immune-related adverse events during checkpoint immunotherapy
Immune-related adverse events (irAEs), caused by anti-PD-1/PD-L1 antibodies, can lead to fulminant and even fatal consequences and thus require early detection and aggressive management. However, a comprehensive approach to identify biomarkers of irAE is lacking. Here, we utilize a strategy that com...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7532211/ https://www.ncbi.nlm.nih.gov/pubmed/33009409 http://dx.doi.org/10.1038/s41467-020-18742-9 |
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author | Jing, Ying Liu, Jin Ye, Youqiong Pan, Lei Deng, Hui Wang, Yushu Yang, Yang Diao, Lixia Lin, Steven H. Mills, Gordon B. Zhuang, Guanglei Xue, Xinying Han, Leng |
author_facet | Jing, Ying Liu, Jin Ye, Youqiong Pan, Lei Deng, Hui Wang, Yushu Yang, Yang Diao, Lixia Lin, Steven H. Mills, Gordon B. Zhuang, Guanglei Xue, Xinying Han, Leng |
author_sort | Jing, Ying |
collection | PubMed |
description | Immune-related adverse events (irAEs), caused by anti-PD-1/PD-L1 antibodies, can lead to fulminant and even fatal consequences and thus require early detection and aggressive management. However, a comprehensive approach to identify biomarkers of irAE is lacking. Here, we utilize a strategy that combines pharmacovigilance data and omics data, and evaluate associations between multi-omics factors and irAE reporting odds ratio across different cancer types. We identify a bivariate regression model of LCP1 and ADPGK that can accurately predict irAE. We further validate LCP1 and ADPGK as biomarkers in an independent patient-level cohort. Our approach provides a method for identifying potential biomarkers of irAE in cancer immunotherapy using both pharmacovigilance data and multi-omics data. |
format | Online Article Text |
id | pubmed-7532211 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-75322112020-10-19 Multi-omics prediction of immune-related adverse events during checkpoint immunotherapy Jing, Ying Liu, Jin Ye, Youqiong Pan, Lei Deng, Hui Wang, Yushu Yang, Yang Diao, Lixia Lin, Steven H. Mills, Gordon B. Zhuang, Guanglei Xue, Xinying Han, Leng Nat Commun Article Immune-related adverse events (irAEs), caused by anti-PD-1/PD-L1 antibodies, can lead to fulminant and even fatal consequences and thus require early detection and aggressive management. However, a comprehensive approach to identify biomarkers of irAE is lacking. Here, we utilize a strategy that combines pharmacovigilance data and omics data, and evaluate associations between multi-omics factors and irAE reporting odds ratio across different cancer types. We identify a bivariate regression model of LCP1 and ADPGK that can accurately predict irAE. We further validate LCP1 and ADPGK as biomarkers in an independent patient-level cohort. Our approach provides a method for identifying potential biomarkers of irAE in cancer immunotherapy using both pharmacovigilance data and multi-omics data. Nature Publishing Group UK 2020-10-02 /pmc/articles/PMC7532211/ /pubmed/33009409 http://dx.doi.org/10.1038/s41467-020-18742-9 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Jing, Ying Liu, Jin Ye, Youqiong Pan, Lei Deng, Hui Wang, Yushu Yang, Yang Diao, Lixia Lin, Steven H. Mills, Gordon B. Zhuang, Guanglei Xue, Xinying Han, Leng Multi-omics prediction of immune-related adverse events during checkpoint immunotherapy |
title | Multi-omics prediction of immune-related adverse events during checkpoint immunotherapy |
title_full | Multi-omics prediction of immune-related adverse events during checkpoint immunotherapy |
title_fullStr | Multi-omics prediction of immune-related adverse events during checkpoint immunotherapy |
title_full_unstemmed | Multi-omics prediction of immune-related adverse events during checkpoint immunotherapy |
title_short | Multi-omics prediction of immune-related adverse events during checkpoint immunotherapy |
title_sort | multi-omics prediction of immune-related adverse events during checkpoint immunotherapy |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7532211/ https://www.ncbi.nlm.nih.gov/pubmed/33009409 http://dx.doi.org/10.1038/s41467-020-18742-9 |
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