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Construction of a Prognostic Immune Signature for Squamous-Cell Lung Cancer to Predict Survival
BACKGROUND: Limited treatment strategies are available for squamous-cell lung cancer (SQLC) patients. Few studies have addressed whether immune-related genes (IRGs) or the tumor immune microenvironment can predict the prognosis for SQLC patients. Our study aimed to construct a signature predict prog...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7533590/ https://www.ncbi.nlm.nih.gov/pubmed/33072067 http://dx.doi.org/10.3389/fimmu.2020.01933 |
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author | Chen, Rui-Lian Zhou, Jing-Xu Cao, Yang Sun, Ling-Ling Su, Shan Deng, Xiao-Jie Lin, Jie-Tao Xiao, Zhi-Wei Chen, Zhuang-Zhong Wang, Si-Yu Lin, Li-Zhu |
author_facet | Chen, Rui-Lian Zhou, Jing-Xu Cao, Yang Sun, Ling-Ling Su, Shan Deng, Xiao-Jie Lin, Jie-Tao Xiao, Zhi-Wei Chen, Zhuang-Zhong Wang, Si-Yu Lin, Li-Zhu |
author_sort | Chen, Rui-Lian |
collection | PubMed |
description | BACKGROUND: Limited treatment strategies are available for squamous-cell lung cancer (SQLC) patients. Few studies have addressed whether immune-related genes (IRGs) or the tumor immune microenvironment can predict the prognosis for SQLC patients. Our study aimed to construct a signature predict prognosis for SQLC patients based on IRGs. METHODS: We constructed and validated a signature from SQLC patients in The Cancer Genome Atlas (TCGA) using bioinformatics analysis. The underlying mechanisms of the signature were also explored with immune cells and mutation profiles. RESULTS: A total of 464 eligible SQLC patients from TCGA dataset were enrolled and were randomly divided into the training cohort (n = 232) and the testing cohort (n = 232). Eight differentially expressed IRGs were identified and applied to construct the immune signature in the training cohort. The signature showed a significant difference in overall survival (OS) between low-risk and high-risk cohorts (P < 0.001), with an area under the curve of 0.76. The predictive capability was verified with the testing and total cohorts. Multivariate analysis revealed that the 8-IRG signature served as an independent prognostic factor for OS in SQLC patients. Naive B cells, resting memory CD4 T cells, follicular helper T cells, and M2 macrophages were found to significantly associate with OS. There was no statistical difference in terms of tumor mutational burden between the high-risk and low-risk cohorts. CONCLUSION: Our study constructed and validated an 8-IRG signature prognostic model that predicts clinical outcomes for SQLC patients. However, this signature model needs further validation with a larger number of patients. |
format | Online Article Text |
id | pubmed-7533590 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-75335902020-10-15 Construction of a Prognostic Immune Signature for Squamous-Cell Lung Cancer to Predict Survival Chen, Rui-Lian Zhou, Jing-Xu Cao, Yang Sun, Ling-Ling Su, Shan Deng, Xiao-Jie Lin, Jie-Tao Xiao, Zhi-Wei Chen, Zhuang-Zhong Wang, Si-Yu Lin, Li-Zhu Front Immunol Immunology BACKGROUND: Limited treatment strategies are available for squamous-cell lung cancer (SQLC) patients. Few studies have addressed whether immune-related genes (IRGs) or the tumor immune microenvironment can predict the prognosis for SQLC patients. Our study aimed to construct a signature predict prognosis for SQLC patients based on IRGs. METHODS: We constructed and validated a signature from SQLC patients in The Cancer Genome Atlas (TCGA) using bioinformatics analysis. The underlying mechanisms of the signature were also explored with immune cells and mutation profiles. RESULTS: A total of 464 eligible SQLC patients from TCGA dataset were enrolled and were randomly divided into the training cohort (n = 232) and the testing cohort (n = 232). Eight differentially expressed IRGs were identified and applied to construct the immune signature in the training cohort. The signature showed a significant difference in overall survival (OS) between low-risk and high-risk cohorts (P < 0.001), with an area under the curve of 0.76. The predictive capability was verified with the testing and total cohorts. Multivariate analysis revealed that the 8-IRG signature served as an independent prognostic factor for OS in SQLC patients. Naive B cells, resting memory CD4 T cells, follicular helper T cells, and M2 macrophages were found to significantly associate with OS. There was no statistical difference in terms of tumor mutational burden between the high-risk and low-risk cohorts. CONCLUSION: Our study constructed and validated an 8-IRG signature prognostic model that predicts clinical outcomes for SQLC patients. However, this signature model needs further validation with a larger number of patients. Frontiers Media S.A. 2020-09-15 /pmc/articles/PMC7533590/ /pubmed/33072067 http://dx.doi.org/10.3389/fimmu.2020.01933 Text en Copyright © 2020 Chen, Zhou, Cao, Sun, Su, Deng, Lin, Xiao, Chen, Wang and Lin. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Immunology Chen, Rui-Lian Zhou, Jing-Xu Cao, Yang Sun, Ling-Ling Su, Shan Deng, Xiao-Jie Lin, Jie-Tao Xiao, Zhi-Wei Chen, Zhuang-Zhong Wang, Si-Yu Lin, Li-Zhu Construction of a Prognostic Immune Signature for Squamous-Cell Lung Cancer to Predict Survival |
title | Construction of a Prognostic Immune Signature for Squamous-Cell Lung Cancer to Predict Survival |
title_full | Construction of a Prognostic Immune Signature for Squamous-Cell Lung Cancer to Predict Survival |
title_fullStr | Construction of a Prognostic Immune Signature for Squamous-Cell Lung Cancer to Predict Survival |
title_full_unstemmed | Construction of a Prognostic Immune Signature for Squamous-Cell Lung Cancer to Predict Survival |
title_short | Construction of a Prognostic Immune Signature for Squamous-Cell Lung Cancer to Predict Survival |
title_sort | construction of a prognostic immune signature for squamous-cell lung cancer to predict survival |
topic | Immunology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7533590/ https://www.ncbi.nlm.nih.gov/pubmed/33072067 http://dx.doi.org/10.3389/fimmu.2020.01933 |
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