Cargando…
Fungal diversity in deep-sea sediments from the Magellan seamounts as revealed by a metabarcoding approach targeting the ITS2 regions
Recent reports have revealed diverse and abundant fungal communities in the deep-sea biosphere, while their composition, distribution, and variations in seamount zones are poorly understood. Using a metabarcoding approach targeting the ITS2 regions, we present the structure of the fungal community i...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7534268/ https://www.ncbi.nlm.nih.gov/pubmed/33062383 http://dx.doi.org/10.1080/21501203.2020.1799878 |
_version_ | 1783590284463964160 |
---|---|
author | Luo, Ye Wei, Xu Yang, Shuai Gao, Yuan-Hao Luo, Zhu-Hua |
author_facet | Luo, Ye Wei, Xu Yang, Shuai Gao, Yuan-Hao Luo, Zhu-Hua |
author_sort | Luo, Ye |
collection | PubMed |
description | Recent reports have revealed diverse and abundant fungal communities in the deep-sea biosphere, while their composition, distribution, and variations in seamount zones are poorly understood. Using a metabarcoding approach targeting the ITS2 regions, we present the structure of the fungal community in 18 sediment samples from the Magellan seamount area of the northwest Pacific. A total of 1,979 fungal OTUs was obtained, which were taxonomically assigned to seven phyla, 17 classes, 43 orders, 7 families, and 98 genera. The majority of these OTUs were affiliated to Basidiomycota (873 OTUs, 44.11% of total OTUs) and Ascomycota (486 OTUs, 24.56% of total OTUs), followed by other five minor phyla (Mortierellomycota, Chytridiomycota, Mucoromycota, Glomeromycota, and Monoblepharidomycota). Sordriomycetes is the most abundant class, followed by Eurotiomycetes, and Dothideomycetes. Five genera were common in most of the samples, including worldwide reported genera Aspergillus, Cladosporium, Fusarium, Chaetomium, and Penicillium. The environmental data we collected (sampling depth, sampling location latitude and longitude, organic carbon content, and organic nitrogen content in the sediment) had no significant influence on the composition and distribution of fungal communities. Our findings provide valuable information for understanding the distribution and potential ecological functions of fungi in the deep-sea sediments of the Magellan seamounts. |
format | Online Article Text |
id | pubmed-7534268 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-75342682020-10-14 Fungal diversity in deep-sea sediments from the Magellan seamounts as revealed by a metabarcoding approach targeting the ITS2 regions Luo, Ye Wei, Xu Yang, Shuai Gao, Yuan-Hao Luo, Zhu-Hua Mycology Article Recent reports have revealed diverse and abundant fungal communities in the deep-sea biosphere, while their composition, distribution, and variations in seamount zones are poorly understood. Using a metabarcoding approach targeting the ITS2 regions, we present the structure of the fungal community in 18 sediment samples from the Magellan seamount area of the northwest Pacific. A total of 1,979 fungal OTUs was obtained, which were taxonomically assigned to seven phyla, 17 classes, 43 orders, 7 families, and 98 genera. The majority of these OTUs were affiliated to Basidiomycota (873 OTUs, 44.11% of total OTUs) and Ascomycota (486 OTUs, 24.56% of total OTUs), followed by other five minor phyla (Mortierellomycota, Chytridiomycota, Mucoromycota, Glomeromycota, and Monoblepharidomycota). Sordriomycetes is the most abundant class, followed by Eurotiomycetes, and Dothideomycetes. Five genera were common in most of the samples, including worldwide reported genera Aspergillus, Cladosporium, Fusarium, Chaetomium, and Penicillium. The environmental data we collected (sampling depth, sampling location latitude and longitude, organic carbon content, and organic nitrogen content in the sediment) had no significant influence on the composition and distribution of fungal communities. Our findings provide valuable information for understanding the distribution and potential ecological functions of fungi in the deep-sea sediments of the Magellan seamounts. Taylor & Francis 2020-08-02 /pmc/articles/PMC7534268/ /pubmed/33062383 http://dx.doi.org/10.1080/21501203.2020.1799878 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Article Luo, Ye Wei, Xu Yang, Shuai Gao, Yuan-Hao Luo, Zhu-Hua Fungal diversity in deep-sea sediments from the Magellan seamounts as revealed by a metabarcoding approach targeting the ITS2 regions |
title | Fungal diversity in deep-sea sediments from the Magellan seamounts as revealed by a metabarcoding approach targeting the ITS2 regions |
title_full | Fungal diversity in deep-sea sediments from the Magellan seamounts as revealed by a metabarcoding approach targeting the ITS2 regions |
title_fullStr | Fungal diversity in deep-sea sediments from the Magellan seamounts as revealed by a metabarcoding approach targeting the ITS2 regions |
title_full_unstemmed | Fungal diversity in deep-sea sediments from the Magellan seamounts as revealed by a metabarcoding approach targeting the ITS2 regions |
title_short | Fungal diversity in deep-sea sediments from the Magellan seamounts as revealed by a metabarcoding approach targeting the ITS2 regions |
title_sort | fungal diversity in deep-sea sediments from the magellan seamounts as revealed by a metabarcoding approach targeting the its2 regions |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7534268/ https://www.ncbi.nlm.nih.gov/pubmed/33062383 http://dx.doi.org/10.1080/21501203.2020.1799878 |
work_keys_str_mv | AT luoye fungaldiversityindeepseasedimentsfromthemagellanseamountsasrevealedbyametabarcodingapproachtargetingtheits2regions AT weixu fungaldiversityindeepseasedimentsfromthemagellanseamountsasrevealedbyametabarcodingapproachtargetingtheits2regions AT yangshuai fungaldiversityindeepseasedimentsfromthemagellanseamountsasrevealedbyametabarcodingapproachtargetingtheits2regions AT gaoyuanhao fungaldiversityindeepseasedimentsfromthemagellanseamountsasrevealedbyametabarcodingapproachtargetingtheits2regions AT luozhuhua fungaldiversityindeepseasedimentsfromthemagellanseamountsasrevealedbyametabarcodingapproachtargetingtheits2regions |