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Hybrid algorithms for generating optimal designs for discriminating multiple nonlinear models under various error distributional assumptions

Finding a model-based optimal design that can optimally discriminate among a class of plausible models is a difficult task because the design criterion is non-differentiable and requires 2 or more layers of nested optimization. We propose hybrid algorithms based on particle swarm optimization (PSO)...

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Autores principales: Chen, Ray-Bing, Chen, Ping-Yang, Hsu, Cheng-Lin, Wong, Weng Kee
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7535070/
https://www.ncbi.nlm.nih.gov/pubmed/33017415
http://dx.doi.org/10.1371/journal.pone.0239864
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author Chen, Ray-Bing
Chen, Ping-Yang
Hsu, Cheng-Lin
Wong, Weng Kee
author_facet Chen, Ray-Bing
Chen, Ping-Yang
Hsu, Cheng-Lin
Wong, Weng Kee
author_sort Chen, Ray-Bing
collection PubMed
description Finding a model-based optimal design that can optimally discriminate among a class of plausible models is a difficult task because the design criterion is non-differentiable and requires 2 or more layers of nested optimization. We propose hybrid algorithms based on particle swarm optimization (PSO) to solve such optimization problems, including cases when the optimal design is singular, the mean response of some models are not fully specified and problems that involve 4 layers of nested optimization. Using several classical examples, we show that the proposed PSO-based algorithms are not models or criteria specific, and with a few repeated runs, can produce either an optimal design or a highly efficient design. They are also generally faster than the current algorithms, which are generally slow and work for only specific models or discriminating criteria. As an application, we apply our techniques to find optimal discriminating designs for a dose-response study in toxicology with 5 possible models and compare their performances with traditional and a recently proposed algorithm. In the supplementary material, we provide a R package to generate different types of discriminating designs and evaluate efficiencies of competing designs so that the user can implement an informed design.
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spelling pubmed-75350702020-10-15 Hybrid algorithms for generating optimal designs for discriminating multiple nonlinear models under various error distributional assumptions Chen, Ray-Bing Chen, Ping-Yang Hsu, Cheng-Lin Wong, Weng Kee PLoS One Research Article Finding a model-based optimal design that can optimally discriminate among a class of plausible models is a difficult task because the design criterion is non-differentiable and requires 2 or more layers of nested optimization. We propose hybrid algorithms based on particle swarm optimization (PSO) to solve such optimization problems, including cases when the optimal design is singular, the mean response of some models are not fully specified and problems that involve 4 layers of nested optimization. Using several classical examples, we show that the proposed PSO-based algorithms are not models or criteria specific, and with a few repeated runs, can produce either an optimal design or a highly efficient design. They are also generally faster than the current algorithms, which are generally slow and work for only specific models or discriminating criteria. As an application, we apply our techniques to find optimal discriminating designs for a dose-response study in toxicology with 5 possible models and compare their performances with traditional and a recently proposed algorithm. In the supplementary material, we provide a R package to generate different types of discriminating designs and evaluate efficiencies of competing designs so that the user can implement an informed design. Public Library of Science 2020-10-05 /pmc/articles/PMC7535070/ /pubmed/33017415 http://dx.doi.org/10.1371/journal.pone.0239864 Text en © 2020 Chen et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Chen, Ray-Bing
Chen, Ping-Yang
Hsu, Cheng-Lin
Wong, Weng Kee
Hybrid algorithms for generating optimal designs for discriminating multiple nonlinear models under various error distributional assumptions
title Hybrid algorithms for generating optimal designs for discriminating multiple nonlinear models under various error distributional assumptions
title_full Hybrid algorithms for generating optimal designs for discriminating multiple nonlinear models under various error distributional assumptions
title_fullStr Hybrid algorithms for generating optimal designs for discriminating multiple nonlinear models under various error distributional assumptions
title_full_unstemmed Hybrid algorithms for generating optimal designs for discriminating multiple nonlinear models under various error distributional assumptions
title_short Hybrid algorithms for generating optimal designs for discriminating multiple nonlinear models under various error distributional assumptions
title_sort hybrid algorithms for generating optimal designs for discriminating multiple nonlinear models under various error distributional assumptions
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7535070/
https://www.ncbi.nlm.nih.gov/pubmed/33017415
http://dx.doi.org/10.1371/journal.pone.0239864
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