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Alternative graphical displays for the monitoring of epidemic outbreaks, with application to COVID-19 mortality

BACKGROUND: Classic epidemic curves – counts of daily events or cumulative events over time –emphasise temporal changes in the growth or size of epidemic outbreaks. Like any graph, these curves have limitations: they are impractical for comparisons of large and small outbreaks or of asynchronous out...

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Autores principales: Perneger, Thomas, Kevorkian, Antoine, Grenet, Thierry, Gallée, Hubert, Gayet-Ageron, Angèle
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7537983/
https://www.ncbi.nlm.nih.gov/pubmed/33023505
http://dx.doi.org/10.1186/s12874-020-01122-8
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author Perneger, Thomas
Kevorkian, Antoine
Grenet, Thierry
Gallée, Hubert
Gayet-Ageron, Angèle
author_facet Perneger, Thomas
Kevorkian, Antoine
Grenet, Thierry
Gallée, Hubert
Gayet-Ageron, Angèle
author_sort Perneger, Thomas
collection PubMed
description BACKGROUND: Classic epidemic curves – counts of daily events or cumulative events over time –emphasise temporal changes in the growth or size of epidemic outbreaks. Like any graph, these curves have limitations: they are impractical for comparisons of large and small outbreaks or of asynchronous outbreaks, and they do not display the relative growth rate of the epidemic. Our aim was to propose two additional graphical displays for the monitoring of epidemic outbreaks that overcome these limitations. METHODS: The first graph shows the growth of the epidemic as a function of its size; specifically, the logarithm of new cases on a given day, N(t), is plotted against the logarithm of cumulative cases C(t). Logarithm transformations facilitate comparisons of outbreaks of different sizes, and the lack of a time scale overcomes the need to establish a starting time for each outbreak. Notably, on this graph, exponential growth corresponds to a straight line with a slope equal to one. The second graph represents the logarithm of the relative rate of growth of the epidemic over time; specifically, log(10)(N(t)/C(t-1)) is plotted against time (t) since the 25th event. We applied these methods to daily death counts attributed to COVID-19 in selected countries, reported up to June 5, 2020. RESULTS: In most countries, the log(N) over log(C) plots showed initially a near-linear increase in COVID-19 deaths, followed by a sharp downturn. They enabled comparisons of small and large outbreaks (e.g., Switzerland vs UK), and identified outbreaks that were still growing at near-exponential rates (e.g., Brazil or India). The plots of log(10)(N(t)/C(t-1)) over time showed a near-linear decrease (on a log scale) of the relative growth rate of most COVID-19 epidemics, and identified countries in which this decrease failed to set in in the early weeks (e.g., USA) or abated late in the outbreak (e.g., Portugal or Russia). CONCLUSIONS: The plot of log(N) over log(C) displays simultaneously the growth and size of an epidemic, and allows easy identification of exponential growth. The plot of the logarithm of the relative growth rate over time highlights an essential parameter of epidemic outbreaks.
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spelling pubmed-75379832020-10-07 Alternative graphical displays for the monitoring of epidemic outbreaks, with application to COVID-19 mortality Perneger, Thomas Kevorkian, Antoine Grenet, Thierry Gallée, Hubert Gayet-Ageron, Angèle BMC Med Res Methodol Technical Advance BACKGROUND: Classic epidemic curves – counts of daily events or cumulative events over time –emphasise temporal changes in the growth or size of epidemic outbreaks. Like any graph, these curves have limitations: they are impractical for comparisons of large and small outbreaks or of asynchronous outbreaks, and they do not display the relative growth rate of the epidemic. Our aim was to propose two additional graphical displays for the monitoring of epidemic outbreaks that overcome these limitations. METHODS: The first graph shows the growth of the epidemic as a function of its size; specifically, the logarithm of new cases on a given day, N(t), is plotted against the logarithm of cumulative cases C(t). Logarithm transformations facilitate comparisons of outbreaks of different sizes, and the lack of a time scale overcomes the need to establish a starting time for each outbreak. Notably, on this graph, exponential growth corresponds to a straight line with a slope equal to one. The second graph represents the logarithm of the relative rate of growth of the epidemic over time; specifically, log(10)(N(t)/C(t-1)) is plotted against time (t) since the 25th event. We applied these methods to daily death counts attributed to COVID-19 in selected countries, reported up to June 5, 2020. RESULTS: In most countries, the log(N) over log(C) plots showed initially a near-linear increase in COVID-19 deaths, followed by a sharp downturn. They enabled comparisons of small and large outbreaks (e.g., Switzerland vs UK), and identified outbreaks that were still growing at near-exponential rates (e.g., Brazil or India). The plots of log(10)(N(t)/C(t-1)) over time showed a near-linear decrease (on a log scale) of the relative growth rate of most COVID-19 epidemics, and identified countries in which this decrease failed to set in in the early weeks (e.g., USA) or abated late in the outbreak (e.g., Portugal or Russia). CONCLUSIONS: The plot of log(N) over log(C) displays simultaneously the growth and size of an epidemic, and allows easy identification of exponential growth. The plot of the logarithm of the relative growth rate over time highlights an essential parameter of epidemic outbreaks. BioMed Central 2020-10-06 /pmc/articles/PMC7537983/ /pubmed/33023505 http://dx.doi.org/10.1186/s12874-020-01122-8 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Technical Advance
Perneger, Thomas
Kevorkian, Antoine
Grenet, Thierry
Gallée, Hubert
Gayet-Ageron, Angèle
Alternative graphical displays for the monitoring of epidemic outbreaks, with application to COVID-19 mortality
title Alternative graphical displays for the monitoring of epidemic outbreaks, with application to COVID-19 mortality
title_full Alternative graphical displays for the monitoring of epidemic outbreaks, with application to COVID-19 mortality
title_fullStr Alternative graphical displays for the monitoring of epidemic outbreaks, with application to COVID-19 mortality
title_full_unstemmed Alternative graphical displays for the monitoring of epidemic outbreaks, with application to COVID-19 mortality
title_short Alternative graphical displays for the monitoring of epidemic outbreaks, with application to COVID-19 mortality
title_sort alternative graphical displays for the monitoring of epidemic outbreaks, with application to covid-19 mortality
topic Technical Advance
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7537983/
https://www.ncbi.nlm.nih.gov/pubmed/33023505
http://dx.doi.org/10.1186/s12874-020-01122-8
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